RNA id: TU269528


Basic Information

Item Value
RNA id TU269528
length 215
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G235805
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22360674 ~ 22360888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTATCTCTACCTGCCAGCAATTTCAAAGGCTAAAATGTGAATAGTGGACTTGACGAGAGAAAATATAAACTCAGTTCATTCCATTATCTATTCCCAGCATACTCTTCTCTGATGATTTCCCCTCTCTTGTCTCATTATGCAACCCTGCTGAGGGAATGTGGCAGTAAAAAGGTCTTCAATCTGAAGTTGGCATGAATGTATCTGGCATGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269524 lncRNA downstream 3070 22357378 ~ 22357604 (-) True G235801
TU269448 lncRNA downstream 12691 22344164 ~ 22347983 (-) True G235740
TU269495 lncRNA downstream 37236 22322165 ~ 22323438 (-) True G235779
TU269517 lncRNA downstream 41098 22319355 ~ 22319576 (-) True G235794
TU269516 lncRNA downstream 41509 22318926 ~ 22319165 (-) True G235793
TU269533 lncRNA upstream 3661 22364549 ~ 22364762 (-) True G235810
TU269532 lncRNA upstream 4223 22365111 ~ 22366009 (-) True G235809
TU269569 lncRNA upstream 63325 22424213 ~ 22424529 (-) True G235843
TU269572 lncRNA upstream 67343 22428231 ~ 22428524 (-) True G235846
TU269576 lncRNA upstream 86204 22447092 ~ 22448225 (-) True LOC110503922
XM_021593568.2 mRNA downstream 18945 22336462 ~ 22341729 (-) False LOC110513923
XM_036972186.1 mRNA downstream 18945 22336462 ~ 22341729 (-) False LOC110513923
XR_005041742.1 mRNA downstream 18945 22336462 ~ 22341729 (-) False LOC110513923
XR_005041743.1 mRNA downstream 18945 22336462 ~ 22341729 (-) True LOC110513923
XM_036972158.1 mRNA downstream 24620 22324722 ~ 22336054 (-) True LOC110513910
trnas-aga-55 mRNA upstream 83202 22444090 ~ 22444171 (-) True trnas-aga-55
trnas-aga-56 mRNA upstream 83394 22444282 ~ 22444363 (-) True trnas-aga-56
trnas-aga-57 mRNA upstream 84604 22445492 ~ 22445573 (-) True trnas-aga-57
trnae-cuc-2 mRNA upstream 85856 22446744 ~ 22446815 (-) True trnae-cuc-2
LOC110503922 mRNA upstream 86239 22447127 ~ 22449700 (-) False LOC110503922
TU268720 other downstream 605173 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 617263 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 861842 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 890729 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 904958 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 212945 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 796221 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1410636 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1819668 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1819668 24180556 ~ 24183964 (-) True G237657

Expression Profile