RNA id: TU269569


Basic Information

Item Value
RNA id TU269569
length 317
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G235843
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22424213 ~ 22424529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtggacaaaggcgtgatctgaaagtgctatgggtccgattgtacacgtggctgaatttatgaaactctttgggataaaaatgtaatctatacgggagtaggtgttatggacattagagtagtatgtatagtccatagatgagctattagtctctctccagatatctatcagtcccatctctttgGTAAGAtagttcaacatctttgcagatctaggatttgtggtggggacatgagatgatttgtctagggttgggtgaagggtacaattaaaatctccggccaccacgccaaaggaaacaatgctcattgaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269532 lncRNA downstream 58204 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 59451 22364549 ~ 22364762 (-) True G235810
TU269528 lncRNA downstream 63325 22360674 ~ 22360888 (-) True G235805
TU269524 lncRNA downstream 66609 22357378 ~ 22357604 (-) True G235801
TU269448 lncRNA downstream 76230 22344164 ~ 22347983 (-) True G235740
TU269572 lncRNA upstream 3702 22428231 ~ 22428524 (-) True G235846
TU269576 lncRNA upstream 22563 22447092 ~ 22448225 (-) True LOC110503922
TU269492 lncRNA upstream 70521 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 100874 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 158296 22582825 ~ 22584854 (-) True G235900
XM_021593568.2 mRNA downstream 82484 22336462 ~ 22341729 (-) False LOC110513923
XM_036972186.1 mRNA downstream 82484 22336462 ~ 22341729 (-) False LOC110513923
XR_005041742.1 mRNA downstream 82484 22336462 ~ 22341729 (-) False LOC110513923
XR_005041743.1 mRNA downstream 82484 22336462 ~ 22341729 (-) True LOC110513923
XM_036972158.1 mRNA downstream 88159 22324722 ~ 22336054 (-) True LOC110513910
trnas-aga-55 mRNA upstream 19561 22444090 ~ 22444171 (-) True trnas-aga-55
trnas-aga-56 mRNA upstream 19753 22444282 ~ 22444363 (-) True trnas-aga-56
trnas-aga-57 mRNA upstream 20963 22445492 ~ 22445573 (-) True trnas-aga-57
trnae-cuc-2 mRNA upstream 22215 22446744 ~ 22446815 (-) True trnae-cuc-2
LOC110503922 mRNA upstream 22598 22447127 ~ 22449700 (-) False LOC110503922
TU268720 other downstream 668712 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 680802 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 925381 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 954268 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 968497 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 149304 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 732580 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1346995 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1756027 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1756027 24180556 ~ 24183964 (-) True G237657

Expression Profile