RNA id: TU269572


Basic Information

Item Value
RNA id TU269572
length 294
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G235846
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22428231 ~ 22428524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAGAAGACCTTGGGTTTCTATCCAGTTGgcttctcatttcatttgattcaTCATATAGTGCCAGAAGACCTTGGGTTTCTATCCAGTTGgcttctcatttcatttgattcaTCATATAGTGCCAGAAGACCTTGGGTTTCTTAATGCTCTCCATTGAGTCTGAAAGTTTGTTGGAAAACATACACTACTCAATGAGAGGTGACTTCACTTTCATTTCCTGGAGATTGACTTAATACAATAATGTCATACTGTATCAACCATAACATATACAGtcaacatacagatgtagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269569 lncRNA downstream 3702 22424213 ~ 22424529 (-) True G235843
TU269532 lncRNA downstream 62222 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 63469 22364549 ~ 22364762 (-) True G235810
TU269528 lncRNA downstream 67343 22360674 ~ 22360888 (-) True G235805
TU269524 lncRNA downstream 70627 22357378 ~ 22357604 (-) True G235801
TU269576 lncRNA upstream 18568 22447092 ~ 22448225 (-) True LOC110503922
TU269492 lncRNA upstream 66526 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 96879 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 154301 22582825 ~ 22584854 (-) True G235900
TU269650 lncRNA upstream 171306 22599830 ~ 22600792 (-) True G235916
XM_021593568.2 mRNA downstream 86502 22336462 ~ 22341729 (-) False LOC110513923
XM_036972186.1 mRNA downstream 86502 22336462 ~ 22341729 (-) False LOC110513923
XR_005041742.1 mRNA downstream 86502 22336462 ~ 22341729 (-) False LOC110513923
XR_005041743.1 mRNA downstream 86502 22336462 ~ 22341729 (-) True LOC110513923
XM_036972158.1 mRNA downstream 92177 22324722 ~ 22336054 (-) True LOC110513910
trnas-aga-55 mRNA upstream 15566 22444090 ~ 22444171 (-) True trnas-aga-55
trnas-aga-56 mRNA upstream 15758 22444282 ~ 22444363 (-) True trnas-aga-56
trnas-aga-57 mRNA upstream 16968 22445492 ~ 22445573 (-) True trnas-aga-57
trnae-cuc-2 mRNA upstream 18220 22446744 ~ 22446815 (-) True trnae-cuc-2
LOC110503922 mRNA upstream 18603 22447127 ~ 22449700 (-) False LOC110503922
TU268720 other downstream 672730 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 684820 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 929399 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 958286 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 972515 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 145309 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 728585 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1343000 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1752032 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1752032 24180556 ~ 24183964 (-) True G237657

Expression Profile