RNA id: TU269146



Basic Information


Item Value
RNA id TU269146
length 259
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G235484
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22441825 ~ 22442083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatatatttagcctCATCTTTCCTAAGTACCGTTTTCACACAAATATGGTCTGACATATACCTGCTCTTAAAACTGAGCTAGCTAAAATCACATCTCTAAAGATAGCAGAAGACCTACCTTGTTCATTTAAACCCAGAACACACTAAATGTAATGCAGAGAAAGACCTATATCATTCTCAAGGCAGAAAAATATGTGTTGGGATGTCTATAACAAGAGGACATTGGTTTTCAAGTAACTGcaaagtgatgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU269109 lncRNA upstream 17719 22366840 ~ 22424106 (+) True G235450
TU269100 lncRNA upstream 105793 22335687 ~ 22336032 (+) True G235442
TU269098 lncRNA upstream 109122 22331882 ~ 22332703 (+) True G235440
TU269096 lncRNA upstream 110935 22330662 ~ 22330890 (+) True G235438
TU269093 lncRNA upstream 114950 22326413 ~ 22326875 (+) True G235435
TU269167 lncRNA downstream 15112 22457195 ~ 22459090 (+) True G235496
TU269165 lncRNA downstream 17077 22459160 ~ 22460466 (+) True G235495
TU269153 lncRNA downstream 40389 22482472 ~ 22488203 (+) True LOC118947118
TU269231 lncRNA downstream 137395 22579478 ~ 22579807 (+) True G235545
TU269249 lncRNA downstream 163820 22605903 ~ 22606114 (+) True G235563
XM_021593581.2 mRNA upstream 360 22430621 ~ 22441465 (+) False LOC110513964
XM_021593583.2 mRNA upstream 360 22430621 ~ 22441465 (+) True LOC110513964
XM_021593569.2 mRNA upstream 37008 22376761 ~ 22404817 (+) False LOC110513938
XR_002472055.2 mRNA upstream 37008 22376761 ~ 22404817 (+) False LOC110513938
XM_021593573.2 mRNA upstream 37008 22385901 ~ 22404817 (+) True LOC110513938
XM_021593628.2 mRNA downstream 18441 22460524 ~ 22472139 (+) False LOC110514034
XM_021593643.2 mRNA downstream 18442 22460525 ~ 22472139 (+) False LOC110514034
XM_021593623.2 mRNA downstream 18443 22460526 ~ 22472139 (+) False LOC110514034
XM_021593640.2 mRNA downstream 18444 22460527 ~ 22472139 (+) False LOC110514034
XR_005041774.1 mRNA downstream 43969 22486052 ~ 22486516 (+) False LOC118947118
TU269077 other upstream 136919 22304493 ~ 22304906 (+) True G235426
TU268551 other upstream 373745 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other upstream 373745 22058679 ~ 22068080 (+) False LOC110503910
TU268500 other upstream 421841 22017594 ~ 22019984 (+) True kiaa0319
TU267870 other upstream 1154823 21286726 ~ 21287002 (+) True G234340
TU269168 other downstream 18457 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other downstream 18457 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other downstream 18457 22460540 ~ 22472917 (+) True LOC110514034
TU269263 other downstream 230653 22672736 ~ 22698834 (+) True G235571
TU269259 other downstream 231442 22673525 ~ 22680728 (+) False G235569

Expression Profile