RNA id: TU269165



Basic Information


Item Value
RNA id TU269165
length 545
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G235495
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22459160 ~ 22460466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCCCCTCCTGGTTCTGCTCTCCTACAGGTGCTGCCAGGAGACACTTGTACCTCCCGCTATCAACAGCCGTTACATTGGGCAGGAAGATATCGAAAGAATCGTCAGCCAAAAGTTCCACTTCACGCTCCAAACCTGCAAACCGTAGGGTGGTGCTGTTAGGTGATAGCCTCTTCATCAATAGACCAGACTCCTTATTATAGGGCTTCTCACCCAGCTTGTACCACCTCACCGCCCGGTACTGGACCCCAGGCTTACGTATTGCTTTACATTTCAGAATTGAGTCCTCTCCACAAACTGACTTCACCTCTTGTGTAGGCTTATCCTGTGTAAGCCCACCTTGCAAGTAGGCAGCTATAGACAAACACAAGGTAAATCATCATTTCAGATGAGTCTGCAGTTAGACTGATATCAAAGTCATTGTTTAATAGAAATTACAACATACCTAGAATGCAGACGAGTTGAAAAAACATATTTGTAGAACTACAGCAATGAAGATGATGATCCAGAAAATAAGTGAATCATTTTATATAGTAAGCTAAAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU269167 lncRNA upstream 70 22457195 ~ 22459090 (+) True G235496
TU269146 lncRNA upstream 17077 22441825 ~ 22442083 (+) True G235484
TU269109 lncRNA upstream 35054 22366840 ~ 22424106 (+) True G235450
TU269100 lncRNA upstream 123128 22335687 ~ 22336032 (+) True G235442
TU269098 lncRNA upstream 126457 22331882 ~ 22332703 (+) True G235440
TU269153 lncRNA downstream 22006 22482472 ~ 22488203 (+) True LOC118947118
TU269231 lncRNA downstream 119012 22579478 ~ 22579807 (+) True G235545
TU269249 lncRNA downstream 145437 22605903 ~ 22606114 (+) True G235563
TU269250 lncRNA downstream 145919 22606385 ~ 22606585 (+) True G235564
TU269182 lncRNA downstream 151577 22612043 ~ 22618089 (+) True LOC110514168
XM_021593581.2 mRNA upstream 17695 22430621 ~ 22441465 (+) False LOC110513964
XM_021593583.2 mRNA upstream 17695 22430621 ~ 22441465 (+) True LOC110513964
XM_021593569.2 mRNA upstream 54343 22376761 ~ 22404817 (+) False LOC110513938
XM_021593628.2 mRNA downstream 58 22460524 ~ 22472139 (+) False LOC110514034
XM_021593643.2 mRNA downstream 59 22460525 ~ 22472139 (+) False LOC110514034
XM_021593623.2 mRNA downstream 60 22460526 ~ 22472139 (+) False LOC110514034
XM_021593640.2 mRNA downstream 61 22460527 ~ 22472139 (+) False LOC110514034
XR_005041774.1 mRNA downstream 25586 22486052 ~ 22486516 (+) False LOC118947118
TU269077 other upstream 154254 22304493 ~ 22304906 (+) True G235426
TU268551 other upstream 391080 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other upstream 391080 22058679 ~ 22068080 (+) False LOC110503910
TU268500 other upstream 439176 22017594 ~ 22019984 (+) True kiaa0319
TU267870 other upstream 1172158 21286726 ~ 21287002 (+) True G234340
TU269168 other downstream 74 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other downstream 74 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other downstream 74 22460540 ~ 22472917 (+) True LOC110514034
TU269263 other downstream 212270 22672736 ~ 22698834 (+) True G235571
TU269259 other downstream 213059 22673525 ~ 22680728 (+) False G235569

Expression Profile