RNA id: TCONS_00029248


Basic Information

Item Value
RNA id TCONS_00029248
length 709
lncRNA type retained_intron
GC content 0.48
exon number 3
gene id XLOC_014823
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26810208 ~ 26823709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTCTTATAAGGATGTGAGTCCCCTGTGGTTGGGAATATGCTTAGCAAACGTTATTAAAGGAGATAAAGGagacaaataatttatttaggaaGAGACTGCCCCTTCTCTTCATCTGGTTTATCGTTGCAATGGATTTTATTCGACAAATTGGAATTTTACTCGGGATTGCGGTGCTTTCCAGCGCGCGTGCCGACAAGACTCAGATTGATCCGCTGATATACGAGGAACAGTTACTATGGGTCAGTGGTGGAGCCGGTCAGGTCAACGCTTACAGGATTCCTCTGCTAACGTTTACATTGCGTGGAAGCCTGCTGGCGTTCTCTGAGGCCAGGAAAATGTCTTCTAGTGACATTGGGGCAAAGTTCATTGCTCTGAGACGCTCCACAGACAGAGGTGCCACCTGGTCTCCCACCTCGTTCATAGTGGACGATGGTTCTCTAGCCGATGGGTTGAGTCTGGGTTCAGTTGTAGTGGATGAGGAGACCGGCGCTGTGATCATCATCTACTCTCTGTGTTTTCACCAGTATCAGTGCAGCCCCTCCAGCACGATGATGGTGCAAAGTCTGGATGATGGCTTCACCTGGAGTGTTCCACGAAATCTCTCTATCGAGCTGGGGGTGAAGAGCTTTGCTCCTGGGCCTGGATTTGGAATACAGGTGAGTAATTCCATGTCAACAAATTCCATGTTCAATGTCAACATTgccacg

Function

GO:

id name namespace
GO:0009313 oligosaccharide catabolic process biological_process
GO:0006689 ganglioside catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko00511 Other glycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-060503-592 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

Ensembl:

ensembl_id ENSDART00000149132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030237 lncRNA downstream 14447 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029779 lncRNA downstream 33386 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029778 lncRNA downstream 40968 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029239 lncRNA downstream 85320 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029241 lncRNA downstream 85323 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029254 lncRNA upstream 89715 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029258 lncRNA upstream 168212 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029263 lncRNA upstream 490009 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029266 lncRNA upstream 509637 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029277 lncRNA upstream 629843 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00029243 mRNA downstream 51583 26739813 ~ 26770083 (-) False XLOC_014819
TCONS_00029242 mRNA downstream 51583 26739813 ~ 26770083 (-) False XLOC_014819
TCONS_00029245 mRNA downstream 51748 26740510 ~ 26769918 (-) False XLOC_014819
TCONS_00029244 mRNA downstream 51799 26740510 ~ 26769867 (-) False XLOC_014819
TCONS_00029246 mRNA downstream 51799 26742398 ~ 26769867 (-) True XLOC_014819
TCONS_00029250 mRNA upstream 34330 26858039 ~ 26863626 (-) False XLOC_014825
TCONS_00029251 mRNA upstream 34330 26858039 ~ 26869103 (-) True XLOC_014825
TCONS_00029252 mRNA upstream 45719 26869428 ~ 26923957 (-) False XLOC_014826
TCONS_00029253 mRNA upstream 48976 26872685 ~ 26923273 (-) False XLOC_014826
TCONS_00029255 mRNA upstream 113834 26937543 ~ 26943936 (-) True XLOC_014827
TCONS_00029233 other downstream 1303126 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 1672682 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 1760789 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 2064342 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029209 other downstream 2064692 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029249 other upstream 4472 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 349005 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 510821 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 640707 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 641395 27465104 ~ 27465170 (-) False XLOC_014836

Expression Profile

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