RNA id: TU269677


Basic Information

Item Value
RNA id TU269677
length 2545
lncRNA type intronic
GC content 0.47
exon number 3
gene id G235938
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22682269 ~ 22685521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgtataggaaggaaataaaggggtgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaataaaggggtgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataagaaggaaatagatggaaacaaagggatgtataggaaggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaggggtgtataggaaggaaatagatggaaataaaggagtgtataggaaggaaatagatggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaacgagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagaggtggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataatgggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtatacgaaggaaatagatggaaataaaggggtgtataggaaggaaagagatggaaataaaggaatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaatagatggaaataaagggatatataggaaggaaataaagggatgtatagcagggaaagagatggaaataaggggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaatagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaaaggatgtataggaaggaaataaaatgatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaaggatgtataggaaggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaataaagggatgtataggagggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaagggatgtataggaaggaaagagatggaaataaagggatgtataggaaggaaataaaaggatgtataggaaggaaagagatggaaataaaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269655 lncRNA downstream 74159 22607877 ~ 22608110 (-) True G235921
TU269650 lncRNA downstream 81477 22599830 ~ 22600792 (-) True G235916
TU269633 lncRNA downstream 97415 22582825 ~ 22584854 (-) True G235900
TU269586 lncRNA downstream 156248 22525403 ~ 22526021 (-) True G235860
TU269492 lncRNA downstream 186345 22495050 ~ 22495924 (-) True snrnp48
TU269702 lncRNA upstream 4370 22689891 ~ 22691471 (-) True G235962
TU269743 lncRNA upstream 83645 22769166 ~ 22770663 (-) True G236003
TU269790 lncRNA upstream 163323 22848844 ~ 22849153 (-) True G236049
TU269833 lncRNA upstream 211799 22897320 ~ 22897536 (-) True G236082
TU269835 lncRNA upstream 214196 22899717 ~ 22899933 (-) True G236084
XM_021593677.2 mRNA downstream 40508 22618094 ~ 22641761 (-) False bmper
XM_036972392.1 mRNA downstream 40508 22618094 ~ 22641761 (-) True bmper
XM_021593683.2 mRNA downstream 70298 22608604 ~ 22611971 (-) True LOC110514157
XM_021593671.2 mRNA downstream 78939 22575947 ~ 22603330 (-) True LOC110514133
XR_002470693.2 mRNA downstream 133377 22547800 ~ 22548892 (-) True LOC110505130
trnap-agg-7 mRNA upstream 163703 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972414.1 mRNA upstream 163984 22849505 ~ 22854858 (-) False LOC110503928
XM_036972412.1 mRNA upstream 163984 22849505 ~ 22866403 (-) True LOC110503928
XM_021593758.2 mRNA upstream 182094 22867615 ~ 22869747 (-) True LOC110514295
XM_021593764.2 mRNA upstream 218208 22903729 ~ 22915153 (-) False LOC110514303
TU269608 other downstream 107280 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 926768 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 938858 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1183437 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1212324 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 471588 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1086003 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1495035 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1495035 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1835698 24521219 ~ 24521544 (-) True G237832

Expression Profile