RNA id: TU269835


Basic Information

Item Value
RNA id TU269835
length 217
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G236084
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22899717 ~ 22899933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCAATGTGGATTAGTGTAGTGTGAGTATGTATGGGTTTTGTGAGCAGGGCCTAAATTAACACATGCCACCTGCCAAATGCAGGTAGATTTTGGCATTGGTGGGTAAGGTGTCTAGTTCACCAGCCACGTTGGAGGGTggtggtcagggctccacagtgcGAGCATTTCACTCGCATTtatgaatacaaatagtaaagtatgatcacatgtatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269833 lncRNA downstream 2181 22897320 ~ 22897536 (-) True G236082
TU269790 lncRNA downstream 50564 22848844 ~ 22849153 (-) True G236049
TU269743 lncRNA downstream 129054 22769166 ~ 22770663 (-) True G236003
TU269702 lncRNA downstream 208246 22689891 ~ 22691471 (-) True G235962
TU269678 lncRNA downstream 214196 22682269 ~ 22685521 (-) False G235938
TU269836 lncRNA upstream 594 22900527 ~ 22900770 (-) True G236085
TU269838 lncRNA upstream 4459 22904392 ~ 22904633 (-) True LOC110514303
TU269846 lncRNA upstream 20905 22920838 ~ 22921076 (-) True G236095
TU269871 lncRNA upstream 55674 22955607 ~ 22955819 (-) True G236120
TU269884 lncRNA upstream 67413 22967346 ~ 22967571 (-) True G236133
XM_021593758.2 mRNA downstream 29970 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 33314 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 44859 22849505 ~ 22854858 (-) False LOC110503928
trnap-agg-7 mRNA downstream 50422 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972411.1 mRNA downstream 50962 22643845 ~ 22848755 (-) True bbs9
XM_021593764.2 mRNA upstream 3796 22903729 ~ 22915153 (-) False LOC110514303
XM_021593770.2 mRNA upstream 3796 22903729 ~ 22919447 (-) False LOC110514303
XM_021593777.2 mRNA upstream 137827 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 137827 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA upstream 137827 23037760 ~ 23051032 (-) True LOC110514322
TU269608 other downstream 324728 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1144216 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1156306 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1400885 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1429772 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 257176 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 871591 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1280623 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1280623 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1621286 24521219 ~ 24521544 (-) True G237832

Expression Profile