RNA id: TU269836


Basic Information

Item Value
RNA id TU269836
length 244
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G236085
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22900527 ~ 22900770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGAGCCACCTGTTGCAATAAAGCCATATTTTAGGTAGGACTCATATTTTCTATTGAATTAGGCTTTTCTTTTTTTTGCAGTCTCGGGCTCAGCTGTCTCTGCATTATCAACATCGTCGTTGGGCCTTTACCTTCCTTACCCCTTCCGGAGAAGCGCTCCAGCGCCGTTTGTTTGTTTATATTTATGTcagctaacgtagctagctagtaCAAAGTTGGCGGGCAACACCGCTCACGCAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269835 lncRNA downstream 594 22899717 ~ 22899933 (-) True G236084
TU269833 lncRNA downstream 2991 22897320 ~ 22897536 (-) True G236082
TU269790 lncRNA downstream 51374 22848844 ~ 22849153 (-) True G236049
TU269743 lncRNA downstream 129864 22769166 ~ 22770663 (-) True G236003
TU269702 lncRNA downstream 209056 22689891 ~ 22691471 (-) True G235962
TU269838 lncRNA upstream 3622 22904392 ~ 22904633 (-) True LOC110514303
TU269846 lncRNA upstream 20068 22920838 ~ 22921076 (-) True G236095
TU269871 lncRNA upstream 54837 22955607 ~ 22955819 (-) True G236120
TU269884 lncRNA upstream 66576 22967346 ~ 22967571 (-) True G236133
TU269920 lncRNA upstream 92998 22993768 ~ 22994150 (-) True G236169
XM_021593758.2 mRNA downstream 30780 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 34124 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 45669 22849505 ~ 22854858 (-) False LOC110503928
trnap-agg-7 mRNA downstream 51232 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972411.1 mRNA downstream 51772 22643845 ~ 22848755 (-) True bbs9
XM_021593764.2 mRNA upstream 2959 22903729 ~ 22915153 (-) False LOC110514303
XM_021593770.2 mRNA upstream 2959 22903729 ~ 22919447 (-) False LOC110514303
XM_021593777.2 mRNA upstream 136990 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 136990 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA upstream 136990 23037760 ~ 23051032 (-) True LOC110514322
TU269608 other downstream 325538 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1145026 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1157116 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1401695 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1430582 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 256339 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 870754 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1279786 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1279786 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1620449 24521219 ~ 24521544 (-) True G237832

Expression Profile