RNA id: TU269846


Basic Information

Item Value
RNA id TU269846
length 239
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G236095
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22920838 ~ 22921076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgcatgtgtgcatgtgtgtgtgtgggagaaagAGAGTTAAGGAGGTCAACTGTAGCAGCGGGAGCAAAGAGAGAAAGTGATGATTAGTCCCAGCTGTgacgtgacagagagagagaaagagggatgagaaagagagcgaaataGAGAAAGGGACATAACGAAGGATGCGGTATACCTCTGAGCACCCAGGGTTAGAGGCTGGTAGGGGCAGGGCACTAGGAGTGGGTGGAATGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269838 lncRNA downstream 16205 22904392 ~ 22904633 (-) True LOC110514303
TU269836 lncRNA downstream 20068 22900527 ~ 22900770 (-) True G236085
TU269835 lncRNA downstream 20905 22899717 ~ 22899933 (-) True G236084
TU269833 lncRNA downstream 23302 22897320 ~ 22897536 (-) True G236082
TU269790 lncRNA downstream 71685 22848844 ~ 22849153 (-) True G236049
TU269871 lncRNA upstream 34531 22955607 ~ 22955819 (-) True G236120
TU269884 lncRNA upstream 46270 22967346 ~ 22967571 (-) True G236133
TU269920 lncRNA upstream 72692 22993768 ~ 22994150 (-) True G236169
TU269926 lncRNA upstream 76555 22997631 ~ 22997973 (-) True G236174
TU269945 lncRNA upstream 90048 23011124 ~ 23011357 (-) True G236192
XM_021593770.2 mRNA downstream 1391 22903729 ~ 22919447 (-) False LOC110514303
XM_021593764.2 mRNA downstream 5685 22903729 ~ 22915153 (-) False LOC110514303
XM_021593758.2 mRNA downstream 51091 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 54435 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 65980 22849505 ~ 22854858 (-) False LOC110503928
XM_021593777.2 mRNA upstream 116684 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 116684 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA upstream 116684 23037760 ~ 23051032 (-) True LOC110514322
XM_036972421.1 mRNA upstream 217560 23138636 ~ 23140888 (-) True LOC110514382
LOC118944658 mRNA upstream 219758 23140834 ~ 23142966 (-) True LOC118944658
TU269608 other downstream 345849 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1165337 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1177427 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1422006 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1450893 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 236033 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 850448 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1259480 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1259480 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1600143 24521219 ~ 24521544 (-) True G237832

Expression Profile