RNA id: TU269869


Basic Information

Item Value
RNA id TU269869
length 295
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G236118
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22951314 ~ 22951608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCACTAAGTCAAATAAACCCTCATGTTTAACACCAACAGTATTCACTAAGTCAAATAAACCCTCATGTTTAACACCAACAGTATTCACTAAGTCAAATAAACCCTCATGTTTAACACCAACAGTATTCACTAAGTCAAATAAACCTTCATGTTTAACACCAACAGTATTCACTAAGTCAAATAAACCCTCATGTTTAACACCAACAGTATTCACTAAGTCAAATAAACCCTCATGTTTAACACCAacagtattcactaagttgatgggtTGTATTTTGGATAATGGTTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269441 lncRNA upstream 26771 22924142 ~ 22924543 (+) True G235733
TU269393 lncRNA upstream 46639 22903742 ~ 22904675 (+) True G235685
TU269386 lncRNA upstream 54610 22895765 ~ 22896704 (+) True G235678
TU269412 lncRNA upstream 102114 22848857 ~ 22849200 (+) True G235704
TU269326 lncRNA upstream 192311 22758544 ~ 22759003 (+) True G235619
TU269872 lncRNA downstream 4382 22955990 ~ 22956201 (+) True G236121
TU269891 lncRNA downstream 23076 22974684 ~ 22975472 (+) True G236140
TU269919 lncRNA downstream 42415 22994023 ~ 22994248 (+) True G236168
TU269934 lncRNA downstream 51961 23003569 ~ 23003948 (+) True G236181
TU269987 lncRNA downstream 84446 23036054 ~ 23040059 (+) True G236234
XM_036972415.1 mRNA upstream 57538 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 57538 22869833 ~ 22893776 (+) True LOC110514282
XM_021593691.2 mRNA upstream 333231 22612036 ~ 22618083 (+) False LOC110514168
XM_021593697.2 mRNA upstream 333231 22612036 ~ 22618083 (+) False LOC110514168
XM_021593660.2 mRNA upstream 376204 22557162 ~ 22575110 (+) True LOC110514114
XM_021593782.2 mRNA downstream 167775 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA downstream 167775 23119383 ~ 23133074 (+) True LOC110514335
XM_036972423.1 mRNA downstream 258810 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 258810 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 284654 23236262 ~ 23290215 (+) False LOC110514420
TU269263 other upstream 252480 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 270586 22673525 ~ 22680728 (+) False G235569
TU269168 other upstream 478397 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 478397 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other upstream 478397 22460540 ~ 22472917 (+) True LOC110514034
TU270030 other downstream 197544 23149152 ~ 23180299 (+) True G236271
TU270066 other downstream 247244 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 395272 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 398483 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 841189 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile