RNA id: TU269987


Basic Information

Item Value
RNA id TU269987
length 4006
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G236234
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23036054 ~ 23040059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatttagaaatgtcgttgtttttgaaagaaaagcacattttttgtccattaaaataacaccaaattgatcagaaatacagtgtagacaatgttaatgcctagaaggccaggatcctggagtggcctcttcactgttgacgttgagactggtgttttgtgtgtACTATTGAATGAAGCTagcagttgaggacttgtgaggcatctgtttctcaaactagaccctctaatgtacttgtccttttcttcagttgtgcaccagggcctcccactcctctttctattctggttagagcaattttgcactgttctgtgaagggagtaatacacagcgagatcttcagtttcttggcaatttcttgcatggaattctcagagcaagaatagactgatgagtttcagaagaaagttatttgttgctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagacactcaactagtctaaagaaggccagttttattgcttctttaatcaggacaacagttttcagctgtactaacataattgcaaaatagttttctaatgatcaattagccttttaaaatgataaacttggattagttaacacaatgtgccattggaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccataaaaaatctgccatttccagctacaatagtcatttacaacattaacaatgtctacactgtttctgatcaagttgatgttatttgaatagactaaaaatgtgattttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgcataTTTTTAAGCGTCAGATAGTACTTTACACATGATCATTTTCAGAGCAGAAATAAATATATTGCACTTAAAAAATCAACGAAACAAAGACTTGTTAGATGCCATCCTGTATATTTAGATTACActtaaagtaataataaaaacacAGCAAAAACATGACAAAATCCTTGCAGATCTCTTTCCCATGGCATACTTTGAGTGTGCGTACAAAGTTTGAAAGTTACAATCCCCCCTTCTACCAAGACTTGGCGAGATTGTCAGCTGCATACACCAGGACATGTTGAAAGATGGGGAGTGAAGTCCAGATGTAGGCTATAGATTGAAGAGAGCACCAGTTGAAGACCTTTGTTAGAGTTCTTATGCGAAATTGTTTAACAATGAAAACACTTGCCTCTTTCAACTGAAAGCCTTAGAGCTAATGCCATCACTGGCAATCATCATGTTCGATAGCACCTCGATAAAGCCTCCAAGTCCATGCATTGTGTAGGCTACTGAGAGTTGTCCATCAACAcgttttcaacaaaaaaaatcctgcaaaactcattccgaCTCCAAACCTGCTGACTGCTTGTGGACACATGGTTTGCAAATTGGTGAGTAAGTGGGAACAGTCATGTAAGCTACATGCAGACTTAGTGCCCACAATAATATGGCCAAATTGTAGCCTAATTTATGCATGTTTTTTGGCTCCATGTGATTGGTTTCTTCAGCATAATGAAATCGAGAGACTCCAAAACCAACAATGAAATACTGTATTAGACCTTCACTTCAATCCAAGTTTGTCCCATTTTCCCCCGAAAGAGAGATCTTCATACTAAAAATAATTGTCAGGATGTCTTAGCTGTGAATTAGAGGTTTACAAAGCTGCCTTTTTCTTGCCAATATAGGAACAGCATTTTACAATAACATTGGTTTTACTGTGGTAACAAACTGTATGAGACATCATTGAATGGATGAATCCATCTGCAATTATTCTTTATTTTTAGAGGAGTGGCACTACAAAGGCACCGATGCATACACTATGCGTTTTGTGTCACTATCTTAGCTTCTGTGTCATTTTGGTTAGAAGGGGCTAGCTTGATGAATCGCCAATGACGTGACGACCAAAAcagatctccctccctccccaccctcctCTAAGTGGAGGCACCACTGAGTCATTATTTACAGGTGTGGACTTTCTCCCAGAGTGCTGTAGTGTCGACACAGCCTGAGGCAGACATAGATCAGGCTACAGTAATCAGGCTATATATAGTGTGGCGCCAGAGGTTAGGTATTGGTTAGGTAGTGAATCAGGCTTCCGGCCAATACAGCAAGAGAAAGTCCATCTTAGCCTTTCACGGCTGCAGAGTCTGCAggttttctctccctcttggtACTTCATTGATACATTACTGATTTGCCACTGATAGGTTAGAGAAGCCAATCTGCTGGTGTTGGGGATACGTGACGACGTAGTGTGATTTTAACGCTCTGTGACTTTGATAGAGAGGTCCTCCAGAGGTCTTCTAGGGCCCATTCACACGTGAGACATGAACTAACATCTATTTTCATTGACCTCACAAATCTAATTGGATGCAGTACATAAAATGGTATGAGGTGAATATAAGCTTTTTGGATGACAAAGGAAACTTGACAAAGAAGTTTGAGACCCGGTCAGggtcaggataaaaaaaaaaaaagttttctgtGTTATCTGTTGCAGCAGCATGCGTCCAATGATATGACACTGTCATGTGACATTCGTCTTATAGtttctgtcctgtgtgtgtgtttgtgtagtgtggatATATTTATGTACTGCTATCAAACATGATCATCTTCCACTATAACTTCTTCACTGTACACATGGCTGGCTTTATAGATGGGAAAGAAACAATTGGCTTCTCGCTGTCTCTAGGGCATCTATGTGCACAAATCTGACTACCATGGCAACAGCCAACCTGACTGGAGGAGGCTATAGGATTCTGCATGCAGAGGAAGCTTAGCGGAGTTTGAGTtcaagcaggagaggagagatgttgCCTCTACCGTCCCTGTGAGTTTTGGTCAGCAAGCTGTGGGAATCCTTTGACTCAGTCAAAAATGGCTGCCATTCCTCCATGACCCAGCAGCTGGAGTGAAGACAGTTCTCCTCCGTGGCCACAAGCGGTGCCCAGGATTGGAATTTGTGCACGCCCATAACTTTTGGAGTCCCGTATTCTTCATTTTCCTCAGAAGCTGTGAGAGAACGAACAATTACCACACCCTCTGGTTTTAATGTCCGTAAGCCAGACAGTTCACTGGTTCTCCTGTCCATGCCTTTCTGGAGAGTGGGTGCAAAATGAACATTGTGACCAACAGTTGGAGGGCAGGGGCAAACGACAGTTATCACAAGCAGACCATTACCTATTTCCCACAACGCATCACTGTGCATGGTCATCATTCCTCAGCATCTctgttgttgatttttttttttatatatacctgGATCATCAGTTCTCATATCTGGGTCGTAAATGTTCATATGCAGGTCAATAGTGTTCATATCTAGTGTTCATATCAGTCTGTGGGTCTCTGTGTCTGTTCCACCAGGTCCCGTAGGAGTCTGTTTCCTCTCCGGTTCAGCTGTCAGCATGCAGGACAGCAGCCAGGCAGCCTCTCCAGGTCGTTCAGTCAGTCGCCTCGGCCAGAGGGCTTATTATTTACAAGGACACGGTGGTGACGATGGGTGATGATGCTGAAGGGGACAGATCGGTGAGTTTATCTActtgtgtgtgcaggtgtgtctATAAACGTAGTTGTAGCTGATGAGGGGCTACTCGGCCAGGCAGTCACCCCAGAGGGAGTCATACAAAGGGGGTCATGACGGTGGAGGAGTGGCGCAGTCCCTGGATGGCAGCGTAGGGGCCCTGCTGGAAGTAGTGGTGATAGCGGGGCATGtggaaggaggggaaggagggccCGCTGCCCTGCATGGTGCCCGCCAGGGCTGAGTGCGTCAGGGGCATGCCCAGCCGGCTGTAGGGGGGCAGGGAGCCCTGCATGGGGTGGGGCAAGGGGTTGGCCATGGAGGTGCTGCTGGAACCCATGGCAGAGAGGGACTGGGGGTGCTGGAAGCCAGAGAAACCAGAGGTGGCAGTGACCCAGGAGCTCAGGGAGAGGTTGTCAGAGGCGGTGAACGCAGAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269934 lncRNA upstream 32106 23003569 ~ 23003948 (+) True G236181
TU269919 lncRNA upstream 41806 22994023 ~ 22994248 (+) True G236168
TU269891 lncRNA upstream 60582 22974684 ~ 22975472 (+) True G236140
TU269872 lncRNA upstream 79853 22955990 ~ 22956201 (+) True G236121
TU269869 lncRNA upstream 84446 22951314 ~ 22951608 (+) True G236118
TU269988 lncRNA downstream 198 23040257 ~ 23042307 (+) True G236235
TU270004 lncRNA downstream 25098 23065157 ~ 23065434 (+) True G236249
TU270009 lncRNA downstream 31421 23071480 ~ 23138925 (+) True G236254
TU270031 lncRNA downstream 104457 23144516 ~ 23173602 (+) False G236271
TU270032 lncRNA downstream 104457 23144516 ~ 23173602 (+) False G236271
XM_036972415.1 mRNA upstream 142278 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 142278 22869833 ~ 22893776 (+) True LOC110514282
XM_021593691.2 mRNA upstream 417971 22612036 ~ 22618083 (+) False LOC110514168
XM_021593697.2 mRNA upstream 417971 22612036 ~ 22618083 (+) False LOC110514168
XM_021593660.2 mRNA upstream 460944 22557162 ~ 22575110 (+) True LOC110514114
XM_021593782.2 mRNA downstream 79324 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA downstream 79324 23119383 ~ 23133074 (+) True LOC110514335
XM_036972423.1 mRNA downstream 170359 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 170359 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 196203 23236262 ~ 23290215 (+) False LOC110514420
TU269263 other upstream 337220 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 355326 22673525 ~ 22680728 (+) False G235569
TU269168 other upstream 563137 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 563137 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other upstream 563137 22460540 ~ 22472917 (+) True LOC110514034
TU270030 other downstream 109093 23149152 ~ 23180299 (+) True G236271
TU270066 other downstream 158793 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 306821 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 310032 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 752738 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile