RNA id: TU270841


Basic Information

Item Value
RNA id TU270841
length 616
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G236994
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23036088 ~ 23036703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccattatcagcaaccatcactcctgtgttccaatggcacattgtgttaactaatccaagtttatcattttaaaaggctaattgatcattagaaaactattttgcaattatgttagtacagctgaaaactgttgtcctgattaaagaagcaataaaactggccttctttagactagttgagtgtctggagcatcagcatttgtgggttcgattacaggctcaaaatggccagcaacaaataactttcttctgaaactcatcagtctattcttgctctgagaattccatgcaagaaattgccaagaaactgaagatctcgctgtgtattactcccttcacagaacagtgcaaaattgctctaaccagaatagaaagaggagtgggaggccctggtgcacaactgaagaaaaggacaagtacattagagggtctagtttgagaaacagatgcctcacaagtcctcaactgctAGCTTCATTCAATAGTacacacaaaacaccagtctcaacgtcaacagtgaagaggccactccaggatcctggccttctaggcattaacattgtctacactgtatttctgatcaatttggtgttattttaatggacaaaaaatgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269949 lncRNA downstream 22256 23013580 ~ 23013832 (-) True G236196
TU269945 lncRNA downstream 24731 23011124 ~ 23011357 (-) True G236192
TU269926 lncRNA downstream 38115 22997631 ~ 22997973 (-) True G236174
TU269920 lncRNA downstream 41938 22993768 ~ 22994150 (-) True G236169
TU269884 lncRNA downstream 68517 22967346 ~ 22967571 (-) True G236133
TU270856 lncRNA upstream 28051 23064754 ~ 23064960 (-) True G237009
TU270894 lncRNA upstream 85780 23122483 ~ 23123076 (-) True G237041
TU270886 lncRNA upstream 106811 23143514 ~ 23143904 (-) True G237033
TU270881 lncRNA upstream 107257 23143960 ~ 23144390 (-) True G237028
TU270922 lncRNA upstream 153908 23190611 ~ 23191037 (-) True G237068
XM_021593770.2 mRNA downstream 116641 22903729 ~ 22919447 (-) False LOC110514303
XM_021593764.2 mRNA downstream 120935 22903729 ~ 22915153 (-) False LOC110514303
XM_021593758.2 mRNA downstream 166341 22867615 ~ 22869747 (-) True LOC110514295
XM_036972412.1 mRNA downstream 169685 22849505 ~ 22866403 (-) True LOC110503928
XM_036972414.1 mRNA downstream 181230 22849505 ~ 22854858 (-) False LOC110503928
XM_021593777.2 mRNA upstream 1057 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 1057 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA upstream 1057 23037760 ~ 23051032 (-) True LOC110514322
XM_036972421.1 mRNA upstream 101933 23138636 ~ 23140888 (-) True LOC110514382
LOC118944658 mRNA upstream 104131 23140834 ~ 23142966 (-) True LOC118944658
TU269608 other downstream 461099 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1280587 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1292677 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1537256 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1566143 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 120406 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 734821 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1143853 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1143853 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1484516 24521219 ~ 24521544 (-) True G237832

Expression Profile