RNA id: TU270009


Basic Information

Item Value
RNA id TU270009
length 2171
lncRNA type read_through
GC content 0.35
exon number 2
gene id G236254
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23071480 ~ 23138925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctcttggctgcatttctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctttgagactatcacagtgcaggtacatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaggtctctTCGTCAGTGGAGAAATAGAAGACGAGAAGTGAGGGAAATCAATTCAAAAGCAGGGTTGAAACTACCACATGTCAACTCATTTCAGGCTTAATCCTAATGCATGAAACTTGAGGTAAATACATCGATTTGAAGTTAGGATTCGGCCTTCCGTGAATCAACTGTGTTGAAATGTAATTGACCCATTGAGTTGGTTAGAGGGAGCATGTGTCCCAAAACCTGTTTCAGCATGTGCATTGAGGATTTTCACCATTTTGAATTAGTCAAATGGGTAGGACTTGcaatgggttaaggaaggatcacagtAGGTCAGTAGGAGGATTCAGCCAATTAATTACCTGTATACACCTGAGGAAACATTCCATAattgcaggtggcagtaaatctaTCTGTTCAAACTATACACACTCCAGCAAAGTAGGTAATGGTATGCACCTTTTCAGTTTATTTTGGTACTGCCAATACACtcgtagaagaagaagaaatggaCAACTTTAAAATGGGGACagccctcaatggtgctgcccatgctcTCACAGAAGTGGCCATTGCAAAGATAGGGGATGAGCTCTCTAGTACATCTCTATGAATTTACCCCAATTCTAATCCATCATATACCCACCAAGCACTGGTTGAAGCAGCCCAGGCGAATGATGTCCCTCCATCCCGTGGCACTGGAAGGTGACAGAGTCCCTAGCCGCTATGGAAAGATCACAgcacacctgccaggtggattAGGAGTCATTCATACAATAGCCTACAGGATTTATATTATGTATCCTTTATTTAGGTGATCCCATTGGTTCTGAAATAGTACTGCTACAGTAACTACACAGTAGCAGTGTGGCAATTATAGTAGTACTTTAGTACTGTGTTAGTAGTACTCTTTGGTTGCATTGTGCTTTTCATGTACTAGTACTTTAGTAGAACTGAGTTGTGAGTAGTTTATTGTAAACATATTTGCTCAGCCTACTCACTGAGGGTTACTGTTGCCGTTGTTCTTCAGGGAGTTTCCGATGAGAATCTCTGCCGCGTCCTGCCTCCAGGGGCAGCAGTCCTCTCTGTTAGTGACGGTAATGGAGGTGACTTTGTGAACAGCCAGCAGGTACACCCTCCACCAGGGGTCGCTCTGAAGCTGGGTGTGGGCACAGGAGCCAGAGAGGCACTCTGCATCCAGGCGACCATCGATGGCGTTCTCGGCATGGGTCAGACGGCTTAGCTTGGACAACTGGGTCACTCTTCCCATCATTGCCAAGTTGCCTTCTTTCAAACAAGAGGGATGGGGTTTGCTCAGAAAAATTACAAGCCTCTGGTTAAGAATTTCTGATTTCTGGTCCCAATTTTAGCCTGGAGGGTACTGTATCATTGGATGTAGGAGTAGCAGATCTTTCCGAATGGCAAGTCTTCTGAGGGATCTCAGAAGATCCCACAGCCAGGCCAGGTTTAGGTTTGGAGCTGTAACAGCTGTCTCAGTGACAGTTGAAGGCAGGGCTGGAAAAAGGAGGAGAGGcacagggagaaagggagtggagtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270004 lncRNA upstream 6046 23065157 ~ 23065434 (+) True G236249
TU269988 lncRNA upstream 29173 23040257 ~ 23042307 (+) True G236235
TU269987 lncRNA upstream 31421 23036054 ~ 23040059 (+) True G236234
TU269934 lncRNA upstream 67532 23003569 ~ 23003948 (+) True G236181
TU269919 lncRNA upstream 77232 22994023 ~ 22994248 (+) True G236168
TU270031 lncRNA downstream 5591 23144516 ~ 23173602 (+) False G236271
TU270032 lncRNA downstream 5591 23144516 ~ 23173602 (+) False G236271
TU270033 lncRNA downstream 5591 23144516 ~ 23173602 (+) False G236271
TU270034 lncRNA downstream 5591 23144516 ~ 23191853 (+) False G236271
TU270060 lncRNA downstream 53911 23192836 ~ 23193447 (+) True G236296
XM_036972415.1 mRNA upstream 177704 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 177704 22869833 ~ 22893776 (+) True LOC110514282
XM_021593691.2 mRNA upstream 453397 22612036 ~ 22618083 (+) False LOC110514168
XM_021593697.2 mRNA upstream 453397 22612036 ~ 22618083 (+) False LOC110514168
XM_021593660.2 mRNA upstream 496370 22557162 ~ 22575110 (+) True LOC110514114
XM_036972423.1 mRNA downstream 71493 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 71493 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 97337 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 97337 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 97337 23236262 ~ 23290996 (+) False LOC110514420
TU269263 other upstream 372646 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 390752 22673525 ~ 22680728 (+) False G235569
TU269168 other upstream 598563 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 598563 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other upstream 598563 22460540 ~ 22472917 (+) True LOC110514034
TU270030 other downstream 10227 23149152 ~ 23180299 (+) True G236271
TU270066 other downstream 59927 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 207955 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 211166 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 653872 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile