RNA id: TCONS_00029252


Basic Information

Item Value
RNA id TCONS_00029252
length 8216
RNA type mRNA
GC content 0.42
exon number 28
gene id XLOC_014826
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26869428 ~ 26923957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aacgaaacgaaaataaaacatttttgaataccaAATAATCTTAaatttttgaagtatgccataaaatattttagattctgATTTAACACgctttcttatttatttgtttgtttaacaacaaaaccaaaatcaagtgtagtagtgcaacaggattattcctgcttgaattattattttattttttatttttttgtaaaccaacaatgctgtgtgtttaAACCATTATTCAAAACATCAAAcatcaaaatatggtcaaccatttggtagagcaggcactTAATTAACTTAACTAATTGTATTTTGATTTCGAGTACATATTAAAGATTAGAaagtacatgtatatatatattgagaaaaGTAACAATCGTCTTTACCTTTTTCTTCAGTTTAGCATACTTCTTTTGCAGCGCTTCTTCGTCTTCTGTTAATGAACTGGGAAATATTGCCATTTTGCTGGACCTtaaggagaaaaacaacagcaatatGTTTAGCAAGCATAAGTATTTTGTTTTCAGTCTCAAGATAGCATCGTGTttttcacaaacatatatatttaatcgTAAGTTGCATAACATACAGCAAAATACACGCATTTACCCTAAATTCAAAGAATAAATTTTATGCGATGAGCGTCTGCAGTAAATCCTCACCTGGCGCGTAAATATGACGTAATCTGTTGTCATCCGAGAAAGGAGGTCAAATTAATCGTTTGTCCATACTGAGATAATTTTAAAGTATCTATTATTTAAAGTGCACCAATACTTTAGTGTGATTTAGATCACACACGTAGATCGTTAAATTATaaagcacaaaataaaataaaatgcatatactTCCGTCCCATTACTTCTGCGCAGCTTCCTGTAGGACTGCCTGAAACTTTATTGAAACTGGAGAACTGCTGAGTGACATGGACAAAATAGATTTGCCCCCAGTGGGTCCTGATGACTTGCCCCTGTCTCTGCTGGAGATGGGCTGTTCTGGGAGATTTGagctcatcacacacacactgcccaaAAACAAACCCCTGCCTCCGCACAGCActCTCCCACATGGACTGCCTCCTACTTGTCTGGATTTAAAGACAGAGGTAGAAAAGCGTTTTCTGCGAGATCCTGCTTGGCTCCCGGTACATGATGTAGATGATGCCTTCAACAAGTTCCTTAAGATAAGTAAGAGAGAAAAAGAAGTGGACTCTCTCCTGCACTGCTCTCTGTCTCAACTGCATTCTGGTCTGTCTGTGGTCAGAGATCCAACCACCGGCATGCTGCTGGATTTCACTGAGGTGTTGTTAGAGGACACAGGTTTGTCTGCAAAAAATTCACTCTCGTTACAAAGACAGCCTGGACCTCCGTCAGAGAGTCTGCGAGGGAGCAACACAAACTATCCATTTCTGCCAGCTGGAATGGAAGAACTGACTTTAGAGCAGATCAAAAACAAGTCAGAGCTGGAAGAAGACATTGACTTTGAGAAAGATTTGATGACAGTTCCTCCTGGGCTGAAGGCTGGTATGGACTTCAGTGACAAAGAAGCCAGAAACACGAAGAGTGAGGTGAACCTGCTGTCGCTTCTGTCTACTTTTGATGATGTCCTTGATGCTCCGCCAGAGGACAAAGAGGGAGTCTCACAAAAAGAGGAGATCGTTAAACTTCCCAGAACTAACAGCCTGGAGGATCTGGGCATTAAAGATTCGGGCAGCTCGCAGCCTCAAGGGAACACAGGCAGTCTGACtgaacaaaagaagaaaaacctGGAAGAAGAAAAGGGAGACAATAAAAAATGGGCCATTCCGGTGGACATCAGCTCACCGTGTGCTGACTTCTACAAACGGATCCCTGATCCAGCGTTTAAGTATCCCTTTGAGCTGGACGTGTTTCAGAAGCAGGCTATTCTCCGTCTGGAAGCTCATGACTCTGTCTTTGTTGCGGCTCACACCTCAGCCGGCAAGACTGTGGTGGCTGAATACGCAATTGCACTTTCCCAGAAACACATGACCAGGACCATTTACACCTCCCCCATTAAGGCCTTGTCCAATCAGAAGTTCCGAGACTTCAAGAACACATTCGGTGATGTGGGACTTTTGACTGGAGACGTGCAACTGAACCCAGAAGGCTCATGTCTCATTATGACCACTGAGATTTTGAGATCGATGCTCTACAATGGCTCGGAGGTCATCAGAGATCTAGAATGGGTCATTTTTGATGAGGTTCACTATATCAATGATGCAGAGGTAAATCATCCACTAATAAATATAGTTCAGTTTTACTTTTCTCTTTACCGCATTCAGATGTCacataatgttgttgtttttcagagAGGAGTGGTGTGGGAGGAAGTGCTTATCATGTTGCCGGAGCATGTTAGCATCATCCTGCTCAGTGCCACAGTGCCAAACGCAGTGGAGTTCAGTGAATGGatcggGCGCATCAAGAAGCGACATATTTACGTGATCAGCACAATTAAGAGGCCTGTTCCTCTAGAGCACTATCTCTACACAGGCAACAGCACCAAGACTCAGAAAGAGCTCTTCATGTTGCTGGACGCAACTGGAAACTTTCTTACTAAAGGctacTACGCTGCAGTGGAAGCCAAGAAGGAGCGCACTAGTAAACATGCACAGTCTTTTGGCACAAAGAACGTATCGCAGCACAACACAACAGCCAGTCAGGATCGTGCGGTGTGGCAAACGCTGTTAAATTATCTGTCTCAGAGGCAGCAGACTCCAGTGGTGGCATTTACATTCTCTAGGACACGATGTGATGAAAACGCTCGCTCTTTGACCTCTCTGGACCTCACCACATCCATAGAGAAGAGCGAGATCCACTCCTTCCTGCAGAAGAGCCTGACCAGACTGAGAGGAGGAGATCGACAGCTACCACAGATCCTGCTGATGCGTGATTTGTTGAAGAGAGGGATTGGTGTTCATCACAGCGGCATCCTGCCAATCCTGAAGGAAGTCATTGAAATGCTCTTCTCCAGAGGTTTAGTGAAGGTTCTGTTTGCTACAGAGACTTTTGCCATGGGTGTGAACATGCCTGCCAGAACTGTTGTGTTTGACAGCATCCGCAAACACGACGGCACGGGATTCAGAAATCTGCTGCCCGgcgAGTACATTCAGATGGCGGGTCGTGCCGGCAGAAGAGGTTTGGATGCCACAGGAACTGTTATCATCCTCTGTAAAGCTGGAGTTCATGATATGGGAGAACTCCACTCAATGATGCTGGGGAAGCCGACGGTGCTGCACTCTCAGTTCAGACTGACCTACACCATGATTCTGAATCTGCTGCGTGTGGAGGCCCTGAGGGTCACCGACATGATGAAGAGAAGCTTCTCTGAAAACCACAGGGATACACAGGCTCACGAGAAGAGAATAAGTGAGCTGAGAAACACGCTGTCTTCTCTTCCTCCGCTGGACACGGAGGGGCAGTTGTCTGATTTACTGTCATATTACCACACAATCACAGAGCTGCACATCACCACACAGAGCCTGCAGCAAGCTGTTCTGGAGTCAGTCAATGGTCTCAAAGCTCTGTCTGTTGGAAGGGTGGTGATCGTGAACAACAGCCAGCATCACAACTCTCTGGGAGTCATTCTACAGGTGTCCAGCGATGCAGTAAATCGCACCTTCACCGCTCTCATTATCTGTGAGAAGGGTAACGAGGAGGCGGCCAGTGATGAGCAATCTAATAAAGTTGCACTTCCCATCTATAGCAAAACATTGTTTATTCCTGAggGACCCTGCAGTCATACTGTGCAGAAACTGAAGTTGCAGGACATTTCTGCTATTACAACCAAAGCACTCAAGGTCATACCAGAGAGAATCATCGACAACTACAACAAAAGACTACAGCCACGCTTCAGGCTTGATCCACCAGGTCAAGCTATCTCTACAGCAACCCAGGAGCTCCTTCGATTGGCTGAGGCAAATATGGGTGGCATGACCGTCCTTGACCCAGTGAATGACCTTCACCTAAAGGGTGTTGATGTGGTGGAGGGTGTGATGAGGCAGCGAGTGTTACAGGACTCTCTAAAAGACTTCCACTGTATCCACTCACCCACCTTCTCTGAACAGTTTACACGTGTGCAGGAGAGGATGAGTGTACAGGAAGAGCTTGATAAGCTTCTGTTCCTGGTGTCTGATCAGTCATTGACACTTCTGCCTGAGTACCATCAGAGAATCAAGGTGCTGGAAGCGCTGCAGTATGTGGACAGCAGTGGTGCGGTTCAGCTGAAGGGTCGTGTGGCATGTCAGATCAGCAGTCATGAGCTCTTACTGACTGAACTCCTGTTTGAGAACACTTTGAGTCCTCTGGCCCCTGAGGAGAGCGCCGCCCTGCTGTCCTGCCTCGTCTTCACACAGAACACCCAGATAGAGCCACATATCACCAACACACTGCAGGAGGGAATCAATCAAGTTCTCGCTGTAGCCCAGCGTATCGGTGACCTGCAGAGGGATTGTGGGATTGCTCAGACCGCTGAAGACTTCGTGGCCCAGTTCAAGTTTGGCCTGACTGAGGTTGTGTACTGCTGGGCAAGAGGAATGCCATTTGCTGAGATAGCCCAGCTGACAGATGTGCAGGAGGGAACAATCGTGCGCTGTATCCAGAGGCTGGACGAGGTCCTGAAGGAAGTCCGACAGGCTGCTCGCATTGTGGGTGACTCTGTCCTGGGCAGTAAGATGGAAAGAGCCTCTCTGGCCATACGCAGAGACATTGTGTTCACCGCCTCGCTCTACACACACTGAagcagacagacacaaacacactgttTGGAGTGGGGTATAATTATAGTGTACAGAACATGGACCTTCAGAACTGTACTTGAACTTCTGAGTGCATGTTTACACTGAGTGTGCACGTGCCTCATAACAGACCAAATTGTGACCTCAATATGAAATGGAGGTTGAGACCAGAAATGAACTGTAATTAAGTATACAGCAATAAAATGAGCTGAGTCTGGAACACTGGTTTCATCTGTGTTGTCAGTAGAAATTATAGAGCGCTTCTGTGATCAGTTTTAAAAGTAGATGAAGGTGGTGTTTTCTTGTGTGGCCGTGTGTGTGGTGTCATATGAACATTGTTGCTGTTAACAGAATCAGTTTTTTTACATCTCTCAGTACGcgtaattttaaatatttcaaatgtatgCATTGTTACATTACGGAAATTACACAACTTTCTCCTTAAATCTTTTATCATTAATGCTGTTACCAATTCATAAGTCAGCACTATAACTAACCGTCATAGACTTTAGGATGAAATATCCCCAATATCATTTGTTTTCAACAAGTGATTAAACATTTTGTTCTTCTAATACAGAATATTTagcatctttgtttttttttcagagtatacttacttacttatttagggtaacttactcccagggccatttatagcAAAGTtgatacccacatagcaaaatttctctggcccagctctggcccacacaatcaggttttgcttggcccacatgccgctgtGAATTACGGTagatgactggaccaaatctggcttccagacaagggccaaacacagaccatatctgggccaagtctcaaccaagttaataactcatagctgggcctgaactgggccagaaaggttggtgtgtcacgattgcaatgaaattaataaacctaTAAAGCGttgtgctttaggcacactatgggccttgttttttctcagtgacctgattggtagaattgatttatttaatcaaaaattatttttatgtattttaaatgtgggtcaagactggccaaactcacgtggcccacaatcaatttttaaaatctgggccaaatactacgttttacatctggcccaaatcttgtgtgccgcattatagacggtgccacctctgccaaacccaggccatggttggcccacatgctgtatgccagtgccggatgaatgcctgatgtcccagctttatgccaaatctgggccagaattctttgctactagggtattTAGCCGCACTAACAAATCCCCTCAAGTAGTTCTAATCCTCTCCATGTCCACCTTTGCTTGATTCTACCATCTTTGTTTTGGTTATCCACAGGGTCATCTTACTTCCAGATTAGATTTCATCACCTTCTTCAATTGACATAATTTTCTCCTGAGTACATGTCCAGCTTTTCGGATCCTTCTACACTTTATTTCACGTATGTCTGCGCTATTGTAGAGGtccctgatctctctctattgtGTTACTTCTCCATTCTCATTTTTTGCAAGTATGCCTGTATATCTTTTTTTCTACTTTATTTTCAAACACTATacgctttttcttttctttctttcttagttTCCATGTCTCAGATCCATACAGTAATACTGGGCAGTTTATTGATTTGTACattcttaatttttgttttgtgtgacaAGGATTTTGATGAGAGCATTCTGTTGCATGCATACAGACATTTATTTGCTGAGTTTAACCTACTTTGTATCTCTGGTTTATCTGTATTCTGATTGGATACGATTACTCCAAGATATATTTTAATTCGCTGACTTGTTCAAACTAGTGTCCATCAATTTTTAACGCTCCTCTTCTTTGATTCTGGTTTTGTGTAAATTTTTGTACTTGGTGTTTGTCTCATTTGACCAATCTTTTCTCTCATCAAAAGTTTAGTTAGGGTGTTAAAATCTTCCAGATTTTCTGTGATTATCACTATATTATTGATGAAAgctagtgtatttattttgtcacTGATTTTAACATCTCTGCTACTTTCTGAAGGGCTTTTTTATGGCAATGTTAAATAACTCCTGCCTGAGTTTACCCTAAAGGGCTCACAGTAATGTTTTTCAgagtaaataacaaacaaaaaattatctCTATATTAATCTCCTTTTAATGCACAATTTTTAATAGAGCCATTTGAAATTCATCTGAAAGAAATACCTGTTGTGATTGTAGCAGTTTATGCCAACTTTTTCATCaattaaaccaggggtgtcaaactcaatccctggagggccgaagccctgcacagtttagttccaaccctgctccaacacacttacctgtaggttttaaacaagcctgaaggactcaattagtttgatcaggtgtgtttaattagggttggaactaaactgtgcagagctgcggcccttttggaaccgagtttgacacctgtgaattaaaccaataattattttaaattctctACATTTTAGAAAGATGAAATAATGAGTCATTGATTCTTAGCCACTGCATGTACTGTAATATGCTGTATTTTTCTGTCTAATCATATTTCTCCCATTCTCCATCACCAATCCAGACTTCATTCACCCCATTGGTAAGCTcctagaccattttgagggatgtaaacaataacgaTGGTCCTAacttatttcctgttttacattttttaactttcACAGcatccgagaatccaaaaagctCCACATTTTGCTAAATAATGTTGTGATAGCTGTTTTATTGTCAAGTCATgactgaattgcctcttgttatagttatgaaatagtttgacaacaaactGGAAATGTGCATGGGTCAATGACATCGCAACATTCAAATGGTCTTTagcaaaaaaaacaattatttgaaTAGATGATGATTTCAGCTATAGCATCAGGTCTGTTTATAGTGTTGGAGGACGGACACCTCAGATTCTAGAGaacatttgattggacagaaaatCTGATGTGAAGCTGAATTGCAGCATGATGTCATCGGAATCAGTGATCACTGCTGGCTGAAGTGAGTGAATATGTTTTGAATGCATTTTAGaattaactattaactattattgtTTATTGCTAATGAGATTGAAgctagttttaattttaattatgaaagGCAAACCTCTTATTGTACTTTTtgtctgatttattttttgttgagaaaaaaaggtggcgtggtggctcagtgattaacactgtcgcctcgcagcaagaaggtcgctggtttgagccccggctgggtcatttggcatgtggagtttgcatgttctcgtgttggtgtgggttccatccaggtgctctggttttccgcacagtccaaatacatgcacaaaaggtaaattgaataagctaaattggccgtagtgtttgtgtgtgagtgcaagagtgtatgggtgctccccagtgctggaaggacatccgctgtgtaaaacatacgctgtggtgacccctgataaataaagggaataagccgaaggaaaatgaataaataag

Function

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay biological_process
GO:0055087 Ski complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-010430-5 Predicted to enable RNA helicase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 2. Orthologous to human SKIV2L (Ski2 like RNA helicase).

Ensembl:

ensembl_id ENSDART00000182390

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029248 lncRNA downstream 45719 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00030237 lncRNA downstream 62209 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029779 lncRNA downstream 81148 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029778 lncRNA downstream 88730 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029241 lncRNA downstream 133085 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029258 lncRNA upstream 67964 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029263 lncRNA upstream 389761 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029266 lncRNA upstream 409389 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029277 lncRNA upstream 529595 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00030238 lncRNA upstream 529595 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00029251 mRNA downstream 325 26858039 ~ 26869103 (-) True XLOC_014825
TCONS_00029250 mRNA downstream 5802 26858039 ~ 26863626 (-) False XLOC_014825
TCONS_00029247 mRNA downstream 45781 26810208 ~ 26823647 (-) False XLOC_014823
TCONS_00029242 mRNA downstream 99345 26739813 ~ 26770083 (-) False XLOC_014819
TCONS_00029255 mRNA upstream 13586 26937543 ~ 26943936 (-) True XLOC_014827
TCONS_00029256 mRNA upstream 33468 26957425 ~ 26964348 (-) True XLOC_014828
TCONS_00029257 mRNA upstream 43400 26967357 ~ 27006764 (-) False XLOC_014829
TCONS_00029259 mRNA upstream 116576 27040533 ~ 27196090 (-) False XLOC_014830
TCONS_00029260 mRNA upstream 117311 27041268 ~ 27261102 (-) True XLOC_014830
TCONS_00029249 other downstream 32304 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1350888 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 1720444 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 1808551 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 2112104 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029261 other upstream 248757 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 410573 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 540459 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 541147 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 541379 27465336 ~ 27465402 (-) False XLOC_014836

Expression Profile

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