RNA id: TU270060


Basic Information

Item Value
RNA id TU270060
length 612
lncRNA type intronic
GC content 0.46
exon number 1
gene id G236296
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23192836 ~ 23193447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATCGGTGCGATAAAACAGATCTCAACCAGCTCCAGTTAATCATCAACAGGGCTGCTTGTATCATGACCGGGCATTCATGGAGGGAACACAAGAGATACTTCTGTAATATGCTGGAATCTAACCACTGACGGACAGGATCCTTTTCAACATCCTAGTGACGTTTCTTTGGGACTATTATAGACATCCTGACAACTGATACACTGAATGTCCTGAGAATGTCCTAAAAACATCCTTATCTGGTCCTCAATGACATCCCAGGACCATCCTGGGAACTAGACAAAACACTCCTAGAGAATGTTCTCTTGTGACCATCACACATTCGTCCCGATGACAGGAACAATAATGTGTTGACTTTTGTCTTGTAGACGGCTACAAGAATGGCTCTGGCTGCACAAGGACACCATGTGGGAGAGCTGCTAGCAGGTATTGGAGGACTTCATGCTCAAGGGGACTTTGGTTTTTGCTATGAGTAAATAtgggtgtttatttatttttgtgtgaAACATTTGCTTCGGTGGATCCTTTTTGTAACCTGCCTGCTGGCCTGCGCTGCTTAATGGGCTCCTTTGTTTCTTTGGTTTGGATTATATGTTTGTCTGATGATTTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270034 lncRNA upstream 983 23144516 ~ 23191853 (+) False G236271
TU270031 lncRNA upstream 19234 23144516 ~ 23173602 (+) False G236271
TU270032 lncRNA upstream 19234 23144516 ~ 23173602 (+) False G236271
TU270033 lncRNA upstream 19234 23144516 ~ 23173602 (+) False G236271
TU270009 lncRNA upstream 53911 23071480 ~ 23138925 (+) True G236254
TU270062 lncRNA downstream 509 23193956 ~ 23194256 (+) True G236298
TU270065 lncRNA downstream 4685 23198132 ~ 23198366 (+) True G236300
TU270067 lncRNA downstream 6437 23199884 ~ 23200135 (+) True G236302
TU270074 lncRNA downstream 12069 23205516 ~ 23205747 (+) True G236309
TU270077 lncRNA downstream 14561 23208008 ~ 23208215 (+) True G236312
XM_021593782.2 mRNA upstream 59762 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 59762 23119383 ~ 23133074 (+) True LOC110514335
XM_036972415.1 mRNA upstream 299060 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 299060 22869833 ~ 22893776 (+) True LOC110514282
XM_021593697.2 mRNA upstream 574753 22612036 ~ 22618083 (+) False LOC110514168
XM_036972423.1 mRNA downstream 16971 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 16971 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 42815 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 42815 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 42815 23236262 ~ 23290996 (+) False LOC110514420
TU270030 other upstream 12537 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 494002 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 512108 22673525 ~ 22680728 (+) False G235569
TU269168 other upstream 719919 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 719919 22460540 ~ 22472917 (+) False LOC110514034
TU270066 other downstream 5405 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 153433 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 156644 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 599350 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 599350 23792797 ~ 23795195 (+) False LOC110514613

Expression Profile