RNA id: TU270066


Basic Information

Item Value
RNA id TU270066
length 224
RNA type TUCP
GC content 0.45
exon number 1
gene id G236301
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23198852 ~ 23199075 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagctgccagtctgcaaggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagcagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270065 lncRNA upstream 486 23198132 ~ 23198366 (+) True G236300
TU270062 lncRNA upstream 4596 23193956 ~ 23194256 (+) True G236298
TU270060 lncRNA upstream 5405 23192836 ~ 23193447 (+) True G236296
TU270034 lncRNA upstream 6999 23144516 ~ 23191853 (+) False G236271
TU270031 lncRNA upstream 25250 23144516 ~ 23173602 (+) False G236271
TU270067 lncRNA downstream 809 23199884 ~ 23200135 (+) True G236302
TU270074 lncRNA downstream 6441 23205516 ~ 23205747 (+) True G236309
TU270077 lncRNA downstream 8933 23208008 ~ 23208215 (+) True G236312
TU270079 lncRNA downstream 10214 23209289 ~ 23209518 (+) True G236314
TU270104 lncRNA downstream 35644 23234719 ~ 23234939 (+) True G236330
XM_021593782.2 mRNA upstream 65778 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 65778 23119383 ~ 23133074 (+) True LOC110514335
XM_036972415.1 mRNA upstream 305076 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 305076 22869833 ~ 22893776 (+) True LOC110514282
XM_021593697.2 mRNA upstream 580769 22612036 ~ 22618083 (+) False LOC110514168
XM_036972423.1 mRNA downstream 11343 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 11343 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 37187 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 37187 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 37187 23236262 ~ 23290996 (+) False LOC110514420
TU270030 other upstream 18553 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 500018 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 518124 22673525 ~ 22680728 (+) False G235569
TU269168 other upstream 725935 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 725935 22460540 ~ 22472917 (+) False LOC110514034
TU270145 other downstream 147805 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 151016 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 593722 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 593722 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 593722 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile