RNA id: TU270067


Basic Information

Item Value
RNA id TU270067
length 252
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G236302
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23199884 ~ 23200135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctagcaaagtctatggctgtctggagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtgttttgtgggtgattgttcctgtctttgtgtttgttgtcatcagataggctgtataggttttcacgttacgtttgttgtttttgtattgttcgtgtttattctttattaaacatgtatcaagaataccacgctgcattttggtccgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270065 lncRNA upstream 1518 23198132 ~ 23198366 (+) True G236300
TU270062 lncRNA upstream 5628 23193956 ~ 23194256 (+) True G236298
TU270060 lncRNA upstream 6437 23192836 ~ 23193447 (+) True G236296
TU270034 lncRNA upstream 8031 23144516 ~ 23191853 (+) False G236271
TU270032 lncRNA upstream 26282 23144516 ~ 23173602 (+) False G236271
TU270074 lncRNA downstream 5381 23205516 ~ 23205747 (+) True G236309
TU270077 lncRNA downstream 7873 23208008 ~ 23208215 (+) True G236312
TU270079 lncRNA downstream 9154 23209289 ~ 23209518 (+) True G236314
TU270104 lncRNA downstream 34584 23234719 ~ 23234939 (+) True G236330
TU270130 lncRNA downstream 81277 23281412 ~ 23282267 (+) True G236356
XM_021593782.2 mRNA upstream 66810 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 66810 23119383 ~ 23133074 (+) True LOC110514335
XM_036972415.1 mRNA upstream 306108 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 306108 22869833 ~ 22893776 (+) True LOC110514282
XM_021593697.2 mRNA upstream 581801 22612036 ~ 22618083 (+) False LOC110514168
XM_036972423.1 mRNA downstream 10283 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 10283 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 36127 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 36127 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 36127 23236262 ~ 23290996 (+) False LOC110514420
TU270066 other upstream 809 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 19585 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 501050 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 519156 22673525 ~ 22680728 (+) False G235569
TU269171 other upstream 726967 22460540 ~ 22472917 (+) False LOC110514034
TU270145 other downstream 146745 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 149956 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 592662 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 592662 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 592662 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile