RNA id: TU270079


Basic Information

Item Value
RNA id TU270079
length 230
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G236314
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23209289 ~ 23209518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttttattgcagAAAAAACAGTATACATACAAGAAGTATACAAACAGACAATGATAACATATGCTAGGGTGTACAACAAATGACCGATTATACAAAGACCTTAAAAGATGCACACATTGATTGATTTAACAGCTTTCTTATTAGAAGAATGTTGAATGGTCTTAATGTACTGCTTGAATTCCTTATAGAAAACACGGAAGAGTGTTTTTTTTATTCGTGAATTTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270077 lncRNA upstream 1074 23208008 ~ 23208215 (+) True G236312
TU270074 lncRNA upstream 3542 23205516 ~ 23205747 (+) True G236309
TU270067 lncRNA upstream 9154 23199884 ~ 23200135 (+) True G236302
TU270065 lncRNA upstream 10923 23198132 ~ 23198366 (+) True G236300
TU270062 lncRNA upstream 15033 23193956 ~ 23194256 (+) True G236298
TU270104 lncRNA downstream 25201 23234719 ~ 23234939 (+) True G236330
TU270130 lncRNA downstream 71894 23281412 ~ 23282267 (+) True G236356
TU270133 lncRNA downstream 88092 23297610 ~ 23297897 (+) True G236359
TU270099 lncRNA downstream 97337 23306855 ~ 23307684 (+) True G236325
TU270138 lncRNA downstream 101042 23310560 ~ 23310914 (+) True G236363
XM_021593782.2 mRNA upstream 76215 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 76215 23119383 ~ 23133074 (+) True LOC110514335
XM_036972415.1 mRNA upstream 315513 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA upstream 315513 22869833 ~ 22893776 (+) True LOC110514282
XM_021593697.2 mRNA upstream 591206 22612036 ~ 22618083 (+) False LOC110514168
XM_036972423.1 mRNA downstream 900 23210418 ~ 23226089 (+) False smarcc1a
XM_036972422.1 mRNA downstream 900 23210418 ~ 23227568 (+) True smarcc1a
XM_036972430.1 mRNA downstream 26744 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 26744 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 26744 23236262 ~ 23290996 (+) False LOC110514420
TU270066 other upstream 10214 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 28990 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 510455 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 528561 22673525 ~ 22680728 (+) False G235569
TU269172 other upstream 736372 22460540 ~ 22472917 (+) True LOC110514034
TU270145 other downstream 137362 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 140573 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 583279 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 583279 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 583279 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile