RNA id: TU270104


Basic Information

Item Value
RNA id TU270104
length 221
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G236330
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23234719 ~ 23234939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGTTGTCGGGTGAGTAGAGAGGGTAGTGAAAGTCAAGTCGCTCTGACTCAATCGATCCCATCTCAAATGTTACTATATACATAGTCACTCAGGACATAGAGGATACTAACAATGTCTCTGTATAATGTTTTTTAAAAGCATGGGGACTGCAGACTTTGAGAACAGTTGGTGAAGGAGAGCTCTGATAGATGATTTCAAGATCTTAGCAAAGTTCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270079 lncRNA upstream 25201 23209289 ~ 23209518 (+) True G236314
TU270077 lncRNA upstream 26504 23208008 ~ 23208215 (+) True G236312
TU270074 lncRNA upstream 28972 23205516 ~ 23205747 (+) True G236309
TU270067 lncRNA upstream 34584 23199884 ~ 23200135 (+) True G236302
TU270065 lncRNA upstream 36353 23198132 ~ 23198366 (+) True G236300
TU270130 lncRNA downstream 46473 23281412 ~ 23282267 (+) True G236356
TU270133 lncRNA downstream 62671 23297610 ~ 23297897 (+) True G236359
TU270099 lncRNA downstream 71916 23306855 ~ 23307684 (+) True G236325
TU270138 lncRNA downstream 75621 23310560 ~ 23310914 (+) True G236363
TU270351 lncRNA downstream 446580 23681519 ~ 23685244 (+) True LOC110514513
XM_036972422.1 mRNA upstream 7151 23210418 ~ 23227568 (+) True smarcc1a
XM_036972423.1 mRNA upstream 8630 23210418 ~ 23226089 (+) False smarcc1a
XM_021593782.2 mRNA upstream 101645 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA upstream 101645 23119383 ~ 23133074 (+) True LOC110514335
XM_036972415.1 mRNA upstream 340943 22869740 ~ 22893776 (+) False LOC110514282
XM_036972430.1 mRNA downstream 1323 23236262 ~ 23290215 (+) False LOC110514420
XM_036972431.1 mRNA downstream 1323 23236262 ~ 23290215 (+) False LOC110514420
XM_036972424.1 mRNA downstream 1323 23236262 ~ 23290996 (+) False LOC110514420
XM_036972425.1 mRNA downstream 1323 23236262 ~ 23290996 (+) False LOC110514420
XM_036972426.1 mRNA downstream 1323 23236262 ~ 23290996 (+) False LOC110514420
TU270066 other upstream 35644 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 54420 23149152 ~ 23180299 (+) True G236271
TU269263 other upstream 535885 22672736 ~ 22698834 (+) True G235571
TU269259 other upstream 553991 22673525 ~ 22680728 (+) False G235569
TU269172 other upstream 761802 22460540 ~ 22472917 (+) True LOC110514034
TU270145 other downstream 111941 23346880 ~ 23349378 (+) True G236370
TU270150 other downstream 115152 23350091 ~ 23350815 (+) True G236372
TU270428 other downstream 557858 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 557858 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 557858 23792797 ~ 23795150 (+) False LOC110514613

Expression Profile