RNA id: TU270342


Basic Information

Item Value
RNA id TU270342
length 2240
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G236549
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23765855 ~ 23770162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGAGTCTCGGCATTTGAACTTTATATTTATTGTGGCATAGTGTGATataagtataatataatataattccAAATGCAAGAAACCCCCAAAATTATGGCCCTCACCAATTTCAACTGCCCTAAGACTTCCACACACGTCAGCAGAACTTGGCTAGTTGAACTGAACGAATGTGCTCGCACACACCCATAAACCTTTGCTAGAAAAACGAAACGTGGCAACACGGTTTGCCCATCTTGAGACGCCATAGCATGCAtgcataaatatatatatcccaaaaatatgggggattggaaattatgcagacaattacattgttgcttccatcaatctatccgcaatattaaagctgatcaaaGTCTATAAGACTTTTAAAGCTGATTCACACACACTttctcaaaatagtcagaattgaTCTAAGATGACTCAATACATTTTATTAACTTAGGTGTTTCTGCAAAGTTAATATTTTAGTCGTGTAATTTTACATCTAAGATGTTGGTGCAGTAtttaagtcatttttgggggaTGAAACAAGTAGTTTATAGTTGAATGACAAACAcgtaattgaagaatccctactgttgaccaatgacAAACAAAAAGGCGTAGACTTCGGCGACCAAAATTCGGGTTGCCGCGAGAAAAATTTGCACAAACAGATGAAAAAACCCTTGTCgaagataaacatttttttttttttaaatTCACAGTCTTTATTCATTGCAGTCACAAAAGTTGCATGATTTTATCCTTTAATCATATAACTTCAGGAGATTAAAGGAATTTGCCAGCAAGATGCATCAGGGTTAGTGCTAGTTTGTTAGGTGGAACTGCTGTACACGTTTACAGTCCAGACAATCTTGCCTCTATTGAACCAATGCCAGATACCATTTGCAATCTTTAAGCTCATATTCAAAACTTAAACCTGTGAGCACATTGCATTTACATGGATATAACTTGGAAATGAAACGCTTCAAATACAAAATCAGCATAGTCTTGAGTGGAATTTTGAACTGACTTTAAAACAGgtttcccccttccccctcccagTGCAACAGCCACAAGATTTCCTTAACCAGGAAGTCACATTACAGCCACGCAAATGCAATGCCAGGCATCACTGGCAAATCTACCCCAAGGAACAGCAATATGATCTTACGAATTGGGTGTAGGCGAGATGACATGCATGTAAGGCAATTAATTGCATGTAGAATAGTCTTCCCTGCTGTAAGAACTTTACATTTTCAATGCCCATAAACTGGGTATACCTTAGTTGAATTCTAAGGCCCTTACTGGTCAGTTCAATGCAGATTCTGTCTTTCTTACACCAATCCCCATTTGTACATGTATGACTAATATCACAAGTCATTTGAGCCAACTTTATGGTCAGAGGCGAAACTTTGCCATTGCCAAGTATAGCTATTAGCTAAGGCTTTTCCATCTTGATTACTTAAAGAGTGAGTTGAAAATTTGCAGATTAATTAACTGTTTCTATTCatttattacaaaaataaaatgtctGTACTTTTTACATTAAATAAAAGCTCCATTTAACAAGTCCGTTAGATTTAAGTAGTCAGATGAATATATTTGGAGACTGTTCCAACAACTACCAAATATCCTCAAATAGCcactcaaacaacaacaaaaacagcacCAAAACATGATGCGGAAAAAAGCTAACTTGAGCTTGACACCAAAGCACTGTCCCAATTCAGTCCGCCACTATAATCCAACAGACTGACCCTCTTCTTTGACTAAACAGGACATCATTGGGTAGTCATTCCAATCATGGTGATATTAAGGATTTCAGAGAACTTGCGGGAATAGTCCATTTTCTTTGTTGAAAAAAGTAAGATGTCTTTTATAGTTCAATTCACCTGACCAACATGGCGAGTGTTGCCCCAAGCCCAGCAAATCCAGCAAAGGCTATGAGGGTGTTCCTTACTGAGGACTCTGGATCTTGCACATGAAAGAACTCTACAAATCCATTCCAAGCATTGTTTTTGACCAGCCAGTCCCTTTGGTCAGAGAGGAGGTATGTGGCGATCTTTTGGCCCACCGACTCAATGCAGTGTCCCCTGCCCATCTCCTTCAAGTGCTGGCTCACCACTGCTCCAAATGCCACCAGGCTGGCGATGCGACCCCAGTTCGTGGTCCCATCACTGAACATGGTCGTGGCCACAGAATTGATGAAACTCATGTCATCGCATCGGTCATCTAAGTCAAGTTTGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270424 lncRNA upstream 14 23765552 ~ 23765841 (+) True G236625
TU270422 lncRNA upstream 3504 23761979 ~ 23762351 (+) True G236623
TU270421 lncRNA upstream 6471 23758573 ~ 23759384 (+) True G236622
TU270415 lncRNA upstream 16349 23749270 ~ 23749506 (+) True G236616
TU270414 lncRNA upstream 17192 23748429 ~ 23748663 (+) True G236615
TU270453 lncRNA downstream 62241 23832403 ~ 23840472 (+) False G236647
TU270459 lncRNA downstream 66383 23836545 ~ 23839623 (+) False G236647
TU270455 lncRNA downstream 71205 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA downstream 71205 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA downstream 71205 23841367 ~ 23842769 (+) True G236647
XR_002472132.2 mRNA upstream 47094 23713371 ~ 23718761 (+) False LOC110514561
XR_002472136.2 mRNA upstream 47094 23713371 ~ 23718761 (+) False LOC110514561
XR_002472134.2 mRNA upstream 47094 23713372 ~ 23718761 (+) False LOC110514561
XR_002472135.2 mRNA upstream 47094 23713372 ~ 23718761 (+) False LOC110514561
XM_021593880.2 mRNA upstream 57039 23702665 ~ 23708816 (+) True LOC110514526
XM_021593930.2 mRNA downstream 10238 23780400 ~ 23795199 (+) False LOC110514613
XM_036972569.1 mRNA downstream 10238 23780400 ~ 23795199 (+) False LOC110514613
XM_036972575.1 mRNA downstream 10239 23780401 ~ 23795199 (+) False LOC110514613
XM_036972576.1 mRNA downstream 10239 23780401 ~ 23795199 (+) False LOC110514613
XM_036972561.1 mRNA downstream 10240 23780402 ~ 23795199 (+) False LOC110514613
TU270150 other upstream 415040 23350091 ~ 23350815 (+) True G236372
TU270145 other upstream 416477 23346880 ~ 23349378 (+) True G236370
TU270066 other upstream 566780 23198852 ~ 23199075 (+) True G236301
TU270030 other upstream 585556 23149152 ~ 23180299 (+) True G236271
TU269259 other upstream 1085127 22673525 ~ 22680728 (+) False G235569
TU270428 other downstream 22635 23792797 ~ 23795150 (+) False LOC110514613
TU270430 other downstream 22635 23792797 ~ 23795195 (+) False LOC110514613
TU270431 other downstream 22635 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other downstream 22635 23792797 ~ 23795077 (+) True LOC110514613
TU270506 other downstream 138588 23908750 ~ 23929087 (+) True LOC110514733

Expression Profile