RNA id: TU270459


Basic Information

Item Value
RNA id TU270459
length 1847
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G236647
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23832403 ~ 23850161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttcgccttgatgacagctttacacactcttggcaatctctcaaccagcttcatgaggttgttacctggaatgcatttcaattaacaggtggcatttatttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaccaTAGtagtgatatacagaagatagccatattcggtaaaataccaagtccatattatggcaagaacagctcaaataagcaaggagaaacgacagcccatcattactttaaaacatgaaggtcagtcaatacggaaaatgtcaagaacatttaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctgtgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagataccctcagaaattgcagcccaaataaatgcttcacagagttcaagtaagagacacatctcaacagactgtgtaaatcaggccttAATAATCAAATTTCTgcaatgaaaccactactaaaggacaccaacaagaagaagagacttgcttgggccaagaaacacgagtaatggacattagaccagtggaaatctgtcctttggtctgatgagtccaaattcaatatgtttggttccaaccgccatgtctttgtgagacgtagagcATGTGCATGATCTCTGCAtgcgtggttcccaccgtgaagaaggtaggtgtgatgttgtgggagtgctttgctggttacactgtcAATGATCTATTTgtaattcaaagcacacttaaccagcatggctaccacagtattctgcagcgatacgccatcccatctggtttgcgcttagtctgactatcatttgtttaggataatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccaacctaaacccaattgagatggtttgggatgagttggaccgcagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttaaagactgttggaaagtcattccaggtaaagctggttgagagaatgccaagagtgtggaaagctgtcatcaaggcaaagggtggctaccttgaagaatctaaaaagtaacacttttctggttactacatgattagatatgtgttatttcatagttttgatgtcttcaatactaTTTTACAAatgagaaaatagtaaaaataaagaaaaccttgaatgagtaggtgtgtccaaacttttgactggtactgtatatttaaaaacattaccatgcagtgtgtgtgtgtgtgtgtgtgtgtctgcatctatcagttacacatacatgtcagtacataaagGAGCAGCATACAAACCGCACTGACTGCATCTGTTTACACAAACCGCAGCTGTTCGTCATTACCTGCATTTTGACTTTAGTGACGTAGCCCTTCTTTCTCCAGTCAAAGGTATCAGGTATGGGGGCACCGGAGGATCCTACAAATGCAGAGGGCTCCCTCTTGAGGTCAGCAGGAACACGCAATGAGGCATAAGACTGGGCAATCTCTTCTTGGGTCATGCCCAGGTCATAGGTGTGCATGTCCATGGACGCCTCCAGGTTGTGGAGGCTGATCAGCTGAAGATTCCTCTCCCAGACCTCCCTTCGGCCCAGCTCCTCGTCTGGTAGTTCTTGCCATGTGTCTTCTTCCACATCTGCCAGTGCTGTTCCAGCATTGGGTCAAACAGGGCAAATGCTGTGCCACATAGTGCAGCGAGCAGCAGGCTCCACAACATCATGCCTGCACAGAAAATAGACAAGTATTATTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270342 lncRNA upstream 66383 23765855 ~ 23770162 (+) True G236549
TU270424 lncRNA upstream 70704 23765552 ~ 23765841 (+) True G236625
TU270422 lncRNA upstream 74194 23761979 ~ 23762351 (+) True G236623
TU270421 lncRNA upstream 77161 23758573 ~ 23759384 (+) True G236622
TU270415 lncRNA upstream 87039 23749270 ~ 23749506 (+) True G236616
TU270455 lncRNA downstream 1744 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA downstream 1744 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA downstream 1744 23841367 ~ 23842769 (+) True G236647
TU270488 lncRNA downstream 31258 23870881 ~ 23871565 (+) True G236671
TU270489 lncRNA downstream 35370 23874993 ~ 23875259 (+) True G236672
XM_021593955.2 mRNA upstream 4296 23820422 ~ 23832249 (+) True LOC110514668
XM_036972575.1 mRNA upstream 41346 23780401 ~ 23795199 (+) False LOC110514613
XM_021593968.2 mRNA downstream 27644 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA downstream 41290 23880913 ~ 23886989 (+) False LOC110514708
XM_036972657.1 mRNA downstream 41290 23880913 ~ 23886989 (+) True LOC110514708
XM_021593980.2 mRNA downstream 52262 23891885 ~ 23907345 (+) False LOC110514755
XM_021593972.2 mRNA downstream 69265 23908888 ~ 23932207 (+) False LOC110514733
TU270430 other upstream 41350 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 41395 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 41395 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 41468 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 485730 23350091 ~ 23350815 (+) True G236372
TU270506 other downstream 69127 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 215696 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 909782 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 926043 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 935656 24775279 ~ 24775945 (+) True G238050

Expression Profile