RNA id: TU270455


Basic Information

Item Value
RNA id TU270455
length 1506
lncRNA type antisense_over
GC content 0.35
exon number 6
gene id G236647
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23832403 ~ 23850161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATAGAAAACAATGTTACAATTCAATCAACAGAATTTGGTGTAAAAGTGCTGAACAATAAAATAAAAGTCAACATCATCAAAAAACCCACCAGGAGCAATCTTGATCAACAAGCCCTTTTTGCATTGACAGGAAAGTGAGACAAAACTCCCATTGCACAGCAATGTTACCTGACCTGACACACTGAATACAACCTATGTAAAGTGCTGTGCACTACGCACATCCTTCATCACAATCATAGTTGTTCCACTGTAGATCAGACTACAATTGAAGTCTGGCAGTTTGAAGATATAACAGTAAGACTTGATGTAGGGCGTTTAAAAGTGCTTGCAAAAGAACTCTGGGATACTCAAACCTCCAGACTATATGAATGTGCTATTCCAGAAACATAGTGTTATTTTCTGTATTGGGTGTAGTCATTGATTGGTGGTTTAGCTTCCCTGCTTCCATGGTGCCCTCTGCCGCTTGGTGTTCACATGATGGGGTAACTGGCCAGGTTGGCCAAGGTAAGGGTAAGCCTCCTCTGTGTCGATGCCTCCGTTTTCCTCAACGTATTCGAAGGCGTTGGTCATGTAGCCTCCACCACAGCCATTGTTCTCAGTAACACAGTCCACCAGGTTCTGGGGGCTGAGGTCTATCAGTTTGCCTGTGGTCTTTGCCAGCTGGCCCTCCAGGGCCCCAGCAGAGCTGAAGGCCCAGCAGGAGCCACAGGAGAGCTGGTTCTTGACTGGGGTCACCATGCCCTTCTTGCGGTAGTCGATGGACCTGGGGAGGTTCACCACATTGTTGCCAGGGATCCAGGTGTTGCTACGGTCCCTGTTCATGGGCACCTGAAGGCCAGTCAGCTTTGCAACTATCTCCTCTGAcgtCATGTCTCCCAGGTGGTTCATGCCCAGCTCGTACGAGTGAATGCCCAGAGCGGCCTCCTCATTGTGGGCTTCGATCAGACGCATGTTCTTCTCCCAGATGGTTCTACGGATCGCCTCCTCCCCcaGGCCGTTGTACTCTCTCAGGTGGGTGGTCTTCCAGGAGTCCCACTGTGCGTCCAGTGACATCTCATTCAGAGGATGGGCTAGGACTGAGCCCAAGAGCAACAGCACACAACCACACAGCAGCATTCTTGGTTGTAGACTTGGAGAGAAGGTGTCGGATGAATTCCTTTGACCAGTTGTTTCCCTGCGATGAAGTAGGTCGCCGTGTGAGTAGTTATATAGTCTGGAGTTTGAGGAAGTGCGACGGGAGTTTAGGAGGGGGAAAAGTTTCAGTAAAGGGGAATTACATCTGGAATCGCTCATCTAAAGGGGCCAGCCAGATGATGTCAGGTGTCAAATTACAGGAGCGTCTCTAACTTCAAAGTCAATATTTAACATTGCAATAGGCCTTTATTCATTGTGCACATTCATCTCAGTCGCATTTGTTTATAACAAGCGTATGACGATTATTTGAATTAAAAGATGTAGGCAAGCAGTATCCTCTTACTGTTTATTTAGAAGATTCAGAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270453 lncRNA upstream 895 23832403 ~ 23840472 (+) False G236647
TU270459 lncRNA upstream 1744 23836545 ~ 23839623 (+) False G236647
TU270342 lncRNA upstream 71205 23765855 ~ 23770162 (+) True G236549
TU270424 lncRNA upstream 75526 23765552 ~ 23765841 (+) True G236625
TU270422 lncRNA upstream 79016 23761979 ~ 23762351 (+) True G236623
TU270488 lncRNA downstream 20720 23870881 ~ 23871565 (+) True G236671
TU270489 lncRNA downstream 24832 23874993 ~ 23875259 (+) True G236672
TU270474 lncRNA downstream 33119 23883280 ~ 23889797 (+) False G236658
TU270475 lncRNA downstream 33119 23883280 ~ 23889797 (+) True G236658
TU270471 lncRNA downstream 43437 23893598 ~ 23907333 (+) True LOC110514755
XM_021593955.2 mRNA upstream 9118 23820422 ~ 23832249 (+) True LOC110514668
XM_036972575.1 mRNA upstream 46168 23780401 ~ 23795199 (+) False LOC110514613
XM_021593968.2 mRNA downstream 17106 23867267 ~ 23886989 (+) False LOC110514708
XM_021593971.2 mRNA downstream 30752 23880913 ~ 23886989 (+) False LOC110514708
XM_036972657.1 mRNA downstream 30752 23880913 ~ 23886989 (+) True LOC110514708
XM_021593980.2 mRNA downstream 41724 23891885 ~ 23907345 (+) False LOC110514755
XM_021593972.2 mRNA downstream 58727 23908888 ~ 23932207 (+) False LOC110514733
TU270430 other upstream 46172 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 46217 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 46217 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 46290 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 490552 23350091 ~ 23350815 (+) True G236372
TU270506 other downstream 58589 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 205158 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 899244 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 915505 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 925118 24775279 ~ 24775945 (+) True G238050

Expression Profile