RNA id: TU271360


Basic Information

Item Value
RNA id TU271360
length 222
lncRNA type intronic
GC content 0.39
exon number 1
gene id G237464
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23873316 ~ 23873537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacatacacgtattgtgtaacatgaagtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcattttctctctatttgtgctttttgtgactcctctctttgtctggaaaaatggcAGAGTTTTTctttggcttggtggtgacctaacagaatcatttgtggtgctttcgctgtaaagcctatttgaaattggacactgtggtgggattaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271359 lncRNA downstream 546 23872261 ~ 23872770 (-) True G237463
TU271358 lncRNA downstream 1445 23871670 ~ 23871871 (-) True G237462
TU271353 lncRNA downstream 5782 23867272 ~ 23867534 (-) True G237457
TU271290 lncRNA downstream 123495 23749554 ~ 23749821 (-) True G237396
TU271247 lncRNA downstream 186586 23685154 ~ 23686730 (-) True G237366
TU271366 lncRNA upstream 8110 23881647 ~ 23884871 (-) True G237470
TU271369 lncRNA upstream 9211 23882748 ~ 23887837 (-) True G237472
TU271378 lncRNA upstream 18397 23891934 ~ 23892166 (-) True G237478
TU271379 lncRNA upstream 19764 23893301 ~ 23893534 (-) True G237479
TU271338 lncRNA upstream 31837 23905374 ~ 23907345 (-) True G237442
XM_021593963.2 mRNA downstream 23392 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 24516 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 32804 23832402 ~ 23840512 (-) True LOC100136261
XM_021593917.2 mRNA downstream 93158 23771511 ~ 23780158 (-) False LOC110514600
XM_021593909.2 mRNA downstream 102440 23768099 ~ 23770876 (-) True LOC110514588
XM_021594003.2 mRNA upstream 102337 23975874 ~ 23980300 (-) True LOC110514815
XR_005041888.1 mRNA upstream 194393 24067930 ~ 24078853 (-) True LOC118947709
XM_021594009.2 mRNA upstream 315672 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 315672 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 315672 24189209 ~ 24198813 (-) True LOC110514831
TU271267 other downstream 93181 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 684285 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1298327 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2117815 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2129905 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 307019 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 307019 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 647682 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 896025 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 896167 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile