RNA id: TU270474


Basic Information

Item Value
RNA id TU270474
length 1372
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G236658
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23883280 ~ 23889797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtgtatatatatatctgatgACTTATCATCCTAAATATCTTGGAGAAGAAAATAATGAACAGTGGTTGTCTAGAAGCCAGTTTATTTAAACTATGTtgtcattttaaaaaaaatggtgtCATTTTCTTTATTCAAGTATTTATTAAACATTACAATAACAGTGCTACAAAACGAATTTGCCGTTACTACATGATGATATGAAATATTATACATGTTCATGTGTATAAGGAATGCTCTTAAAGGGTCAAGGTTCGTTTCACTCATATCAGGTGTGCTTGGTGGATCTGATATACAGATATATAGTAAGTGTGGATATCATGTGTCAACTTGCCAATACAGGTCAACCAAGCATTGCCCTCTGACCTGAGGATAACTATTTAAGCTTATCCACAGAGGATCCATTCAGAGACTGCATACTCACCATTTGCTTAAGGCTCTATGAAACTATAATAATATGCAAACACATGATTGTAGTTACATAATAGATGTATAGAATATTGTACTAGGCTATATTcaaatactgtagttaaatcagtTTCACTGTACAGTAACATTTCATGGCTCACTTTTTGACTAGCCTCTAGTTTACGAAAATTCATGTTGTTTTGGGGACAGGAGTATTATTTAGCTATCAGAATATGACAGTGTCCAGCGGGTGATGAAATTATAATCTGTACATAAGAATGTATCCAATTCCATGTCATATTATAAGCAATCTTTTAAGCTTTAAATCCTATTTCCATTTGATTTTTTATAACAAAGTAAGATAGTTCGCACACATCAAATACAGAGAATTCAAGATCATTTTTGCAAGTCGTTTTCTTTTTATATCTGCGGAATTTCATACTGTATAATTTGGTAAGATGTTGCAGTCAGCAACAATGCTTCAATGATAATATAACTGCATAACATTCATGTAACCTCACACAGTTTATTTTTCCTGAATGTTTATCGATCACAGGGTATTGAAAATATGTGCCTGAGTAATCTTACTCGCCATTAAAGAAACAATGATAAACTTTAATGGCGAACAGTACCTTGTGAAATTCAATGTCAAATGTAGGTCGTGGACATTTCCATGCTCTAGGTTACTTTATGGCTGTATCTAGTCCTGTGGATTAGTGTCACTCAAATATGCCACTCTTCTTTCATGTACACTTGTTGTGTAGGTACACACAAACCAAAATTCCAAAACAATGTAAATTATGTACACATCTATAGTTAAGTCTGTTTTGCTATCTTATTTGTAAAATATAATCTTTTTGCATTTTGAAATGATTAAAAACCTCCTTTAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270489 lncRNA upstream 8021 23874993 ~ 23875259 (+) True G236672
TU270488 lncRNA upstream 11715 23870881 ~ 23871565 (+) True G236671
TU270455 lncRNA upstream 33119 23841367 ~ 23850161 (+) False G236647
TU270456 lncRNA upstream 38814 23841367 ~ 23844466 (+) False G236647
TU270457 lncRNA upstream 40511 23841367 ~ 23842769 (+) True G236647
TU270471 lncRNA downstream 3801 23893598 ~ 23907333 (+) True LOC110514755
TU270502 lncRNA downstream 42512 23932309 ~ 23933163 (+) True G236684
TU270504 lncRNA downstream 43491 23933288 ~ 23933833 (+) True G236686
TU270505 lncRNA downstream 44139 23933936 ~ 23934443 (+) True G236687
TU270538 lncRNA downstream 55749 23945546 ~ 23945785 (+) True G236707
XM_021593955.2 mRNA upstream 51031 23820422 ~ 23832249 (+) True LOC110514668
XM_036972575.1 mRNA upstream 88081 23780401 ~ 23795199 (+) False LOC110514613
XM_021593980.2 mRNA downstream 2088 23891885 ~ 23907345 (+) False LOC110514755
XM_021593972.2 mRNA downstream 19091 23908888 ~ 23932207 (+) False LOC110514733
XM_021593974.2 mRNA downstream 38530 23928327 ~ 23932207 (+) False LOC110514733
XM_021594000.2 mRNA downstream 49153 23938950 ~ 23941425 (+) False LOC110514794
XM_021593997.2 mRNA downstream 50806 23940603 ~ 23941425 (+) True LOC110514794
TU270430 other upstream 88085 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 88130 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 88130 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 88203 23792797 ~ 23795077 (+) True LOC110514613
TU270150 other upstream 532465 23350091 ~ 23350815 (+) True G236372
TU270506 other downstream 18953 23908750 ~ 23929087 (+) True LOC110514733
TU270587 other downstream 165522 24055319 ~ 24055667 (+) True G236753
TU271992 other downstream 859608 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 875869 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 885482 24775279 ~ 24775945 (+) True G238050

Expression Profile