RNA id: TU271338


Basic Information

Item Value
RNA id TU271338
length 1929
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G237442
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23905374 ~ 23907345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGTTGATTACTTTATTGATTTTCACTGTACATGTTCAGTAAAGGGAAACATATGGAGTTACAGATCTGTTACATGGACATGTATTAACACTTCATATAGACAGACATCTGTCCTTAAAAAAAATGGTTATGGTGAGGCATTAACGAGCATGATACCAATACAATCTCCTCTTCAATCGAGTTTGGTAAGCTGATTCCCAATACAAATGTACTAAGACACAGAATGCAATCAACACTGTCCAAAGCACCAGAGAAAGGATTTAAAGACAATACAATTCACTTCACTCTATTTCTCTGCTGGCATTATTTATCTAACGGGTAATTGAACACAACAAACCAGTTTAAATCTTTCGAGGATAATGATAATCACTCGCATGCGATATATCCACTGTTTATGTCCACGTCAAAGCGGGGACTCCCGGCTATGAAGGTGGTCATTAAATAAAGTGCTCCAGAGAAAACAAACTCCCATATCACTGCTGCCCCTTGGAAATCCATGAAAGGCCAAATACAATCAACTCTGCACAGCCACGATTCACTGACCGTTTTTAACAATACCCACTGACACTAGGCCATCTGTCTTGGTAAAAGAGCTTGTATGTCTCTGCAGTGAGCGATACAGGTTCAGTTGCCTAATTAGTGTTGGCTAGCGTATGAGTGAGTGGCTCCTGTTCACTGTTTTCAGAGACACACCAGCTTCATGCTCAAAATACAATGAAACAGATAAGCAACAGTAAATACTGGAGTAAAGAGAATGAGATTGAAGTGGGTGATTGGTAaacaagaggtgtgtgtgtgtgtgtgtgtgtgtgtgTGTGTGTGAGTTTGAGAAAGAGATTTGGGAAACCAATTACTCAAAGTGCTAAGTGAGTGAGAAGCGGCAGGCGGCGGATGAGGCGGCTCAACACAGCTTATGTTTGGCACAGTCAATAACCCGCATCAGTGCAATGCAGCAAGCAGATCCTTCCGAGACCTCGAGACAACAAACTTACAGCCACCcccagagagaaagatagaaccTGCAGAACTATGGCTAAAACTGTTCTAAGAACAGCATTATGTCGACTGTTTTCGACCAATATTTTCAGGCGACAGTTTTTTTTTGCCATTTCAAAATTCGCCTACAAAGCTCAGTGGCACAGTTCAAAACACAGTAGTGGTTATAAGGTGGTGCTTCAGCACTGAGATAAAACAATCAATACATGGGGACAATAGACCTGCACTTTGTTGCAACTACGTTCATATTAATATGTTACATTCAACATTTGCTTTGAGTAAACCACTCCCTCCCAGAAAACATTCTCTGCCTCCAATAAAGCATACACTATTGTTATGTGAGGTCAGGtgctaaaataaaaaacatctaTTGCTTAAAGAGGAATTTTGTTCCATATCTTCCAGAAATGTCAATCAATTTCAGTCTTTCTCCCCAGAGTATGGTGGCTGCTCAAAGTGTTCTACTTCACAAAATGATCCTATCAAATTATGTCAAGCCTTTTGTTACAGCATACAGATACAAGTATGAAAATAACCCCTTTGAGTATTGTGCACTGGATTTTCCCATTGAGAATAGGTTAGTTAAAGCAGTCAATGAGTAACATCATTGTACATCCACAGTATTATGGAAATCCAGAGAGGACATATGAATTAAAAAAATAGTTATCTCGTTGTGTCGAGATCAAGACATATTTTTCTCATAACAAAAGTTGTTTTGTCGAGATCACAAGATAATCAAAAGTACAACTTATCACCCATTCATTTCTTCTTCAGATGCCCGATAACCACTTCACCAAGGAGCCCTGTGGCTGTGTGGGGCATTTAAGCACGGAACGATGCCTGACAGGCGACACAGTCTCCCAGGGTGCCCGCCACCCCCAAGACCATATTAAATCATATGCAAgaaacaacacagctctacttGTGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271379 lncRNA downstream 11840 23893301 ~ 23893534 (-) True G237479
TU271378 lncRNA downstream 13208 23891934 ~ 23892166 (-) True G237478
TU271369 lncRNA downstream 17537 23882748 ~ 23887837 (-) True G237472
TU271366 lncRNA downstream 20503 23881647 ~ 23884871 (-) True G237470
TU271360 lncRNA downstream 31837 23873316 ~ 23873537 (-) True G237464
TU271414 lncRNA upstream 26658 23934003 ~ 23934828 (-) True G237512
TU271412 lncRNA upstream 30256 23937601 ~ 23938518 (-) True G237510
TU271429 lncRNA upstream 58619 23965964 ~ 23967707 (-) True G237522
TU271472 lncRNA upstream 138118 24045463 ~ 24045671 (-) True G237563
TU271476 lncRNA upstream 150999 24058344 ~ 24058612 (-) True G237567
XM_021593963.2 mRNA downstream 55450 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 56574 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 64862 23832402 ~ 23840512 (-) True LOC100136261
XM_021593917.2 mRNA downstream 125216 23771511 ~ 23780158 (-) False LOC110514600
XM_021593909.2 mRNA downstream 134498 23768099 ~ 23770876 (-) True LOC110514588
XM_021594003.2 mRNA upstream 68529 23975874 ~ 23980300 (-) True LOC110514815
XR_005041888.1 mRNA upstream 160585 24067930 ~ 24078853 (-) True LOC118947709
XM_021594009.2 mRNA upstream 281864 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 281864 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 281864 24189209 ~ 24198813 (-) True LOC110514831
TU271267 other downstream 125239 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 716343 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1330385 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2149873 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2161963 21738845 ~ 21743411 (-) True G235092
TU271572 other upstream 273211 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 273211 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 613874 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 862217 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 862359 24769704 ~ 24770323 (-) True LOC110515154

Expression Profile