RNA id: TCONS_00029259


Basic Information

Item Value
RNA id TCONS_00029259
length 3446
RNA type mRNA
GC content 0.49
exon number 24
gene id XLOC_014830
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27040533 ~ 27261102 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACACAAAAGTGATTAAAGCAATGTGAAAGCaagatgtatttatgtatgtatgcagtTGCATTGTACTTTTTTGTATGATTGTATAAATCAGAGTATGTTTTCTTGTACATTCCTCATTGGCACTTGCAATAAGTACGTGTaactgaaacgtacaacaaaacgtacaaTAAGTTTCAGATTATCTGAAATATGTAACCAGACATACCCAGAACAATGTATTtggcaaaaatgtaggctgaggcacatatttccaatgggTCTGGGCTGAAAATCACCCTTTTGTTGATGTCTCATAAGAAAATGAGCAACGAAAAGTATCAGGAGGAACCTTTTTCAGGTTTTTCAGAAGCACAGCCAGAATCACATATTAAGAAtaagattgtgtttttttttttgacacttaCCTGATCCCCTATTGATAATGCTGATCCGCTCTCTTTCTCTCGTTCTGTAGGTGGAAGGATGGCGCTCTCGCTTGTTCTGCTGTTTCTCCTTGGGTCTTTCTCACTCGCAATGGCCTCACGTAATATAACTGCAGGTTGTGCTATTATTCGACCACCTAGAGATGGAGGGATCAGATACAGGGGTCTGACCCAGGAACAGATCCGCAGTGTCCAGGTGTTGCCGGTGGATTATGAAATCGAGTATATCTGCAGAGGAAGCAGAGTAATTGTTGGACCAAAGGTCAGAAAGTGTCTCCCTGATGGCACCTGGACCGACCTGAACCAGCGCAGCAAATGCTTGCTGCCATGTCCGCGTGTGTGGACGTCCCTGGAGAACGGCCGTGTGACGGTTCATCCTCCAGGACCAGCAGTAGAGGGCACTATACTTCACTACAGCTGTTTGGAGGGTTTCATCCTGGTGGGCAGAAACAGCACACAGTGCAATAAACTAGGCAAATGGGACTCACCCAAACCGGTCTGCCACTATGACAGACATTATACAGGCAAAAAGAAACTCTACATCGGAGCCCTGTTCCCTATGAGTGGCGGATGGCCAGGTGGTCAAGCATGTCTCCCTGCTGCCCAAATGGCCCTGGATCTGGTGAACAAGAGAACGGATATTCTTCCGGATTATGAGCTCGAATTAATCCACTATGACAGTATGTGTGATCCTGGAGAGGCCACAAAGCTGCTGTATGACCTGCTGTACACAGAGCCTATAAAGATCGTCCTGATGCCTGGCTGCAGCTCTGTGTCCACGCTGGTGGCCGAAGCTGCTCGCATGTGGAACCTCATAGTGTTGTCGTATGGATCCAGTTCTCCAGCTCTCTCCAACCGTCAGCGTTTTCCCACCTTCTTCCGCACACACCCCTCAGCCACACTGCACAACCCCACCCGCGTGCAGCTCTTCCAGAAGTGGAAGTGGACCAAGATCGCCACCATCCAGCAGACCACCGAGGTCTTCACCTCTacTCTGGATGATCTAGAGCAGAGGGTGAAGGAAGCAGGCATTGAGATCAGCGTGAGGCAAAGTTTCCTCACGGATCCTGCTGTGGCCGTCAAGAACCTCAAGAGGCAAGATGCTCGCATCATTGTGGGGCTGTTTTACGAAACGGAAGCCAGGAAAGTGTTTTGTGAGGTCTATAAGGAGAAGCTGTATGGGAAAAAGTATGTGtggtttctgattggctggtaCGCTGACAACTGGTTCAAGATCAAAGACCCATCCATCAACTGCACTGTTGAGCAGATGACAGAAGCTGTGGAGGGACATGTGACCACTGAGATTGTCATGCTCAACCCAGAGACAGTGAGAGGGGCCTCCAACCTGACCTCACAGGAGTTTCTAGCGCAGCTGATGTCCAAGCTGGGCGGGAAGAATCCAGAGGAGACCGGAGGATTTCAGGAAGCTCCTTTGGCGTATGATGCAGTATGGGCTCTGGCTCTGGCACTCAATAAGACAGTGGGACCCTTGAAGGCAAAGGGCCGCAGATTGGAAGactttaattataataacaaGGACATCACGGCGGAGATTTACCGAGCCCTGAACACAAGTTCATTCGAGGGGGTTTCGGGTCATGTGGTGTTTGACGCCCAGGGCTCTAGGATGGCTTGGACCCTCATTGAACAACTGCAAGGAGGAAGTTACAAGAAGATTGGATACTACGATATGACCAAAGGCAATCTCTCTTGGTATGGGAATGACAGGTGGATAGGTTCTGGCCCACCTGCTGATCAGACAGTGGTGATTCAGAAGTTCAGATATCTGTCACAGAAACTCTTCGTCTCTGTGTCTGTTTTCGCTGGCTTGGGCATTTTAATGGGGATTGTTTGCCTCACCTTTAACATCTACAACAGCAATGTCAGGTACATTCAAAACTCGCAGCCCTACCTAAACAACATGACCGCAGTGGGCTGCATGATGGCTCTAGCTGCTGTATTTCCTCTGGGAATTGATGGGCTGCATGTACGGAACTCTCAGTTTCCTGTGGTCTGTCAGTTTCGTTTGTGGCTGCTTGGACTAGGCTTCAGTTTGGCTTATGGAAGTATGTTTACGAAGATCTGGTGGGTTCACACTGTGTTCACAAAGAAGGATGAGAAAAAAGACAAGAGAAAGCACCTGGAGCCCTGGAAGCTCTACGCCACCGTCGGGGTCCTGCTGGTAATCGACATCCTGTCTCTTATGATTTGGCAGATCGTGGACCCCTTGCATATCACAGTCGAGAAGTTCACCAAAGAAGCTCCCAAAGGCGATGTGGATGAGTTGATCGAGCCTCTGCTGCAGCACTGCAGTTCAGAGAAGATGAACACATGGCTTGGTGTTGTGTATGGCTATAAAGGTCTGCTGCTGCTTCTGGGTATTTTCCTGGCATATGAAACCAAGTCTGTGTCCACTGAAAAAATTAACGATCATCGAGCTGTTGGGATGGCCATCTACAACGTCTCGGTGTTGTGTATGATAACAGCTCCTGTCACCATGATTCTGTCCTCGAAGCAGGACGCCTCATTCGCCTTCGCATCTCTGGCCATTATCTTCTCTGTCTACATCACTCTGGTAGTCCTCTTCGTCCCCAAGATGCGAAGGCTCATCACTCGAGGCGAATGGCAGTCAGACCAGCAGGAGACCATGAAGACCGGCTCATCTACAAACAACAATGATGAAGAGAAATCCCGCCAGCTGGAGAGAGAGAACAAAGAGCTGCAGAAGATCATCCAAGAGAAAGAGGAGCGAGTATCAGAGCTGAGAAACCAGCTGTCAGAGCGGCAGGCCCTGCGCTCCAGGAAGCGGCCCACCTCCAATCAGAACCACAGCTCTCCATCTATTCCCACTCCACAGAACGATCCCAAATCTCTTCTCCCGCCTCCAGGATACCCGCTGCCTTCCTCCGACAACCACTCCTTCTCCAACTCTTCCCCCTTATACCAGCCTGATGGCAAGATCAATCGCAACAACTGCCATCCTGGACGCCTGCAGCTCCTCTACAAGTGTCAACACTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0038039 G protein-coupled receptor heterodimeric complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-5 Predicted to enable G protein-coupled GABA receptor activity. Acts upstream of or within behavioral response to nicotine. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of G protein-coupled receptor heterodimeric complex. Is expressed in central nervous system; eye; female organism; and male organism. Orthologous to human GABBR1 (gamma-aminobutyric acid type B receptor subunit 1).

Ensembl:

ensembl_id ENSDART00000045616

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029258 lncRNA downstream 33770 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029254 lncRNA downstream 122983 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029248 lncRNA downstream 216824 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00030237 lncRNA downstream 233314 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029779 lncRNA downstream 252253 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029263 lncRNA upstream 117628 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029266 lncRNA upstream 137256 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029277 lncRNA upstream 257462 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00030238 lncRNA upstream 257462 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00030239 lncRNA upstream 267840 27463930 ~ 27469200 (-) False XLOC_014836
TCONS_00029257 mRNA downstream 33769 26967357 ~ 27006764 (-) False XLOC_014829
TCONS_00029256 mRNA downstream 76185 26957425 ~ 26964348 (-) True XLOC_014828
TCONS_00029255 mRNA downstream 96597 26937543 ~ 26943936 (-) True XLOC_014827
TCONS_00029252 mRNA downstream 116576 26869428 ~ 26923957 (-) False XLOC_014826
TCONS_00029253 mRNA downstream 117260 26872685 ~ 26923273 (-) False XLOC_014826
TCONS_00029262 mRNA upstream 86982 27283072 ~ 27315062 (-) False XLOC_014832
TCONS_00029264 mRNA upstream 117847 27313937 ~ 27336092 (-) False XLOC_014832
TCONS_00029265 mRNA upstream 120377 27316467 ~ 27334394 (-) False XLOC_014832
TCONS_00029267 mRNA upstream 138437 27334527 ~ 27339844 (-) False XLOC_014832
TCONS_00029269 mRNA upstream 138440 27334530 ~ 27339670 (-) False XLOC_014832
TCONS_00029249 other downstream 203409 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1521993 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 1891549 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 1979656 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 2283209 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029268 other upstream 138440 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 268326 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 269014 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 269246 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029289 other upstream 272359 27468449 ~ 27468515 (-) True XLOC_014836

Expression Profile

//