RNA id: TU270587


Basic Information

Item Value
RNA id TU270587
length 349
RNA type TUCP
GC content 0.46
exon number 1
gene id G236753
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24055319 ~ 24055667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcgatcacgtggatttggatatgttccgcattgcgtccaacaacaacattgacgaatacgctgattcggtgagcgagttcattagaaagtgcattgacgatgttatacccacagcaacaattaaaacattcccaaaccagaaaccgtggattgatggcagcattcgcgcgaaactgaaagcgcgaaccactgcttttaaccagggcaaggtgaccggaaacatgaccaaatacaaacagtgtagctattccctccgcaaggcaatcaaacaagctaagcgtcagtatagagacaaagtagagtcgcaattcaacggctcagacacaagaggtatgtgtaagggtctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270586 lncRNA upstream 2196 24052892 ~ 24053123 (+) True G236752
TU270577 lncRNA upstream 23471 24031635 ~ 24031848 (+) True G236743
TU270538 lncRNA upstream 109534 23945546 ~ 23945785 (+) True G236707
TU270505 lncRNA upstream 120876 23933936 ~ 23934443 (+) True G236687
TU270504 lncRNA upstream 121486 23933288 ~ 23933833 (+) True G236686
TU270597 lncRNA downstream 10297 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA downstream 10297 24065964 ~ 24068498 (+) True G236762
TU270635 lncRNA downstream 46473 24102140 ~ 24102355 (+) True G236798
TU270619 lncRNA downstream 128685 24184352 ~ 24184656 (+) True G236782
TU270683 lncRNA downstream 159714 24215381 ~ 24215807 (+) True G236838
NM_001124662.1 mRNA upstream 25890 24019751 ~ 24029429 (+) True rhgb
XM_036972687.1 mRNA upstream 79515 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA upstream 79515 23957102 ~ 23975804 (+) True LOC110503942
XM_021593992.2 mRNA upstream 104832 23946808 ~ 23950487 (+) True LOC110514781
XM_021594000.2 mRNA upstream 113894 23938950 ~ 23941425 (+) False LOC110514794
XM_036972730.1 mRNA downstream 49849 24105516 ~ 24184256 (+) False LOC110503950
XM_036972719.1 mRNA downstream 49850 24105517 ~ 24184256 (+) False LOC110503950
XM_036972757.1 mRNA downstream 49850 24105517 ~ 24184256 (+) False LOC110503950
XM_036972767.1 mRNA downstream 49850 24105517 ~ 24184256 (+) False LOC110503950
XM_036972785.1 mRNA downstream 49850 24105517 ~ 24184256 (+) False LOC110503950
TU270506 other upstream 126232 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 260124 23792797 ~ 23795195 (+) False LOC110514613
TU270428 other upstream 260169 23792797 ~ 23795150 (+) False LOC110514613
TU270431 other upstream 260169 23792797 ~ 23795150 (+) False LOC110514613
TU270432 other upstream 260242 23792797 ~ 23795077 (+) True LOC110514613
TU271992 other downstream 693738 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 709999 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 719612 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1139620 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1485102 25540769 ~ 25541613 (+) True G239026

Expression Profile