RNA id: TU270635


Basic Information

Item Value
RNA id TU270635
length 216
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G236798
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24102140 ~ 24102355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGTACTCTTCACGGATggatcctggtttcaactgtactgggcagatggcagacagtgtgtatggtgtcatgtgggcAAGCAGTTTGACGATGTCAAcgctgtgaacagagtgcccaatggttgcagtggggttaaggtatgggcaggtataagctacggacaacgaacacaatttaatttttatggcattttgaatgcatagagatactGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270597 lncRNA upstream 1282 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA upstream 33642 24065964 ~ 24068498 (+) True G236762
TU270586 lncRNA upstream 49017 24052892 ~ 24053123 (+) True G236752
TU270577 lncRNA upstream 70292 24031635 ~ 24031848 (+) True G236743
TU270538 lncRNA upstream 156355 23945546 ~ 23945785 (+) True G236707
TU270619 lncRNA downstream 81997 24184352 ~ 24184656 (+) True G236782
TU270683 lncRNA downstream 113026 24215381 ~ 24215807 (+) True G236838
TU270687 lncRNA downstream 119918 24222273 ~ 24222648 (+) True G236842
TU270689 lncRNA downstream 121624 24223979 ~ 24224206 (+) True G236844
TU270614 lncRNA downstream 156728 24259083 ~ 24261294 (+) True LOC110514864
NM_001124662.1 mRNA upstream 72711 24019751 ~ 24029429 (+) True rhgb
XM_036972687.1 mRNA upstream 126336 23957102 ~ 23975804 (+) False LOC110503942
XM_036972694.1 mRNA upstream 126336 23957102 ~ 23975804 (+) True LOC110503942
XM_021593992.2 mRNA upstream 151653 23946808 ~ 23950487 (+) True LOC110514781
XM_021593997.2 mRNA upstream 160715 23940603 ~ 23941425 (+) True LOC110514794
XM_036972730.1 mRNA downstream 3161 24105516 ~ 24184256 (+) False LOC110503950
XM_036972719.1 mRNA downstream 3162 24105517 ~ 24184256 (+) False LOC110503950
XM_036972757.1 mRNA downstream 3162 24105517 ~ 24184256 (+) False LOC110503950
XM_036972767.1 mRNA downstream 3162 24105517 ~ 24184256 (+) False LOC110503950
XM_036972785.1 mRNA downstream 3162 24105517 ~ 24184256 (+) False LOC110503950
TU270587 other upstream 46473 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 173053 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 306945 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 647050 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 663311 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 672924 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 1092932 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1438414 25540769 ~ 25541613 (+) True G239026

Expression Profile