RNA id: TU271572


Basic Information

Item Value
RNA id TU271572
length 2931
RNA type TUCP
GC content 0.32
exon number 2
gene id G237657
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24180556 ~ 24183964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAATAAAATTGTCTTTTCTATATCATCATTACAATTACCATCGATGGTCACAATAATGATAATATTAACAGTAATAATAGCAATTACCATAGAACAATTATAATAAAAACAGACAATAGAACTGTCACCAGCACAAATTAACACTGGAAAGTGAGATTCTCTAAACATCATTCATTATACATGGGAAATATGGGGGCGCAGGTTAACTATTGTCATGACGATTGTCTTTTCATTTGTGATTACAGTGACCCTTAGTGTTGTTCTGAGATAATGTCAGGGCTTTATGCAACACATCGATTGGCCAATGTCCAGAGTACTAACCAACCATCTCCCCATAGTCTGCTTCCACTAGTGACCATTTAGTCTAGTTATGAAACATCGCTTCATGGCGTGTGGCCCTATTCAAGACATAGCTACCATTTTTAtgaaaaaaaaaccccatcaGGGTCAATGTTTTGTTCAAAGCTTAGGACACAACAGTCTTACAGTCCAAGGGTGTGCGAACATGCCGGCAGTCGTGAtagctctctctctgccatccgTCTCTAGACGATCGTCTAGACTCCTGAAGAGTCAGGCTGCACAATCCCTACAGCAACAACTACAACGATATAAAACAATAAAGAGCCAATGTGAGGTCATTTGAACAGAGTGCAGAGTATATGTGAGTAtggtgtttgagtgtgtggagaAATTAGCCGTTTTGGCAGAAAATTGATAGTCGTGGAGGTCAAATGAGAGTGAGATGGACTTGTCTTTTAAGTCACGGGTAGGGAGCGAGTGAAATGCTGTAATTAATTAATGTGGCCAGGGAGGAACTCTCGTCTAACATAAAGCACAAGGGATACTTGTCTGgctaatgtgtgtgaatgtgtttgtatgtgtgtgttggatgaGTTTGATGTACCTGAGGACATGCAGACATGACTGTCCCATTCTGGAGGACACCTGTCTTTTAAAGAGGGGGCATTTTGGGGGATTGGGGGGAAGGAAGGGGTTAAAGTGCGCTCCATCAGAGTACTAACCACTGCTCACTCAAATAGTCCAATCCACTGCTACTTTCCATTCTGTCCCTCTAGCACCCTCACTTGGCTTTGCAACGTAGTACACTTATGTACACACAAATAGAACGACAGATCCACTGAGAATCAACACATTGGCTTTTAGGGATATCCTGCTGAACATATGTGAACATATATTTCTATATACAATCCCTGTCATCTATCGTTTTCTCTGCATGGTATGCAGTTCATCCCTTACTCTCAAAATCTACTATCGctgctgttatatatatatatatatacccacaAAAAAACAATATCCCTGCTATACAAAAGCCATACAGAAGGAAACAGAACAAATTGCTTATATACACAGTTCTTTGCTTTTTCTCCCAGTTTATATCTCTTATTCAGAGCCTTCTGAATCACTGCCattgtttaacaaaaatacttttCGTGTGTGAGTGCAGATGGATTTGAGCGTGGGAAAAATCTAAAAAAGTCAAGAAGGTAGTAACAAAAAAACTTTACACAAAAAGAGCATTTGAAATAAATATCAAAAACAGGAACACACACGTAGAATCTGAAGTTGATCTGTAGGTATCTGTAGCATGTGTCATAGAGCTAGTGCAGCCCATCCCTGATAAAACAGTATTTGACCTAGATAAGGTATCGATGTCTCAGATTAAACAGCTATTTGCATGATTCTGATTAAATACCTGGCTAAAACTAAACAAAACAAGGATCGTCCACTTTAGAACAGTGAATCCTGTCTTATCAAATGGATAGCTAGTAAGTTTGACTTGGTGAATTTTGGGTTCTTAAATCTAAATTAGAAATGTTTATAGAAATGTAAAGATGGCTGATGGAcaagtcagacagagagaggacgtaATATTCCAACAAAACCGTTTAAATCTCATTCACCAATCTCATACTCTTTACAAAAACACCAAAAGCTGGATATAACAGTACCACTGGGCAGATACAAAGAAGTGGATTCATTTTGGTTGTCGTACTGTTTCTCAACAGAGCAGTGCAGCTGGACTAGAGACCTACTGTGGATAAATGACAGGAGGATACCAGATGTGTATTATGTGATGTAGAGGGTAAACAGAAAACCCAGCAAAGCCAATAGTCAGTCAATAGTCAGTCAGTTTTCTAgacgctctctctcccttcaaaACGAAAAGGAGACAGAGCCAGCTTGAACAAAAGAGAACTCATTCATTCTAATCCTAATCTTGTCCAACACACTATGTTGACATGTAATCCCTGGTTCGGTTACTCTGCCCCTATAGGGGGTGCATGTgtgagaatatgtgtgtgtgtgtgtaAGAGCATGCGCAAATGGGCGTGTccggtgcatgtgtgtgtgtgtttgtgtgtggtggaGGCATGTGTGGAGGTCAGCATTTACTGTACATACGGTAAAtaggtgtggggtgggggggggtgtgagagagaggggggcatctCTCCCCTTCACTCCCTTGTTCTACACATCTATGTTACCCAAGTGTCCAGTCTCATTCTCTTCACATTGGCACCCTCctgctcctgctgctcctgcGTGGACGAGGGCCTCAGGAGCCCCATGGCCGAGGAGGCCCCTCCCTGGTGGTGGAAGTCCTGGGCCCGCCCCTGGGCCCCATCGTCCCGGTCCCCCTCGTAGGAGCTGCCGTTGCTGCTCAAGCTGCCGACGGGCGAGCGGCCCTGCAGGGTGGACGGCTCCAGGCGCAGGGCCCCTGGGTACTGGCCTGACATAGGGGCCCCTGTGATGGTCACTAGGTCTCCTCCTCCGCCACCCCCGACTGTGGAGCACGGGGTGCTGCGGTCACGGTTGGGCGACACGGGCTCCGACTTGATGCTGATGTTGGGGTTGGTGTTAATTGTCAGCATGGTGCCCTGAGGTAAGTGGCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271503 lncRNA downstream 78455 24101852 ~ 24102101 (-) True G237594
TU271502 lncRNA downstream 79088 24101224 ~ 24101468 (-) True G237593
TU271476 lncRNA downstream 121944 24058344 ~ 24058612 (-) True G237567
TU271472 lncRNA downstream 134885 24045463 ~ 24045671 (-) True G237563
TU271429 lncRNA downstream 212849 23965964 ~ 23967707 (-) True G237522
TU271585 lncRNA upstream 16094 24199648 ~ 24199944 (-) True G237663
TU271624 lncRNA upstream 72331 24255885 ~ 24256465 (-) True G237701
TU271626 lncRNA upstream 100645 24284199 ~ 24284429 (-) True G237703
TU271628 lncRNA upstream 102003 24285557 ~ 24285790 (-) True G237705
TU271638 lncRNA upstream 116639 24300193 ~ 24300653 (-) False G237714
XR_005041888.1 mRNA downstream 101703 24067930 ~ 24078853 (-) True LOC118947709
XM_021594003.2 mRNA downstream 200256 23975874 ~ 23980300 (-) True LOC110514815
XM_021593963.2 mRNA downstream 330632 23841341 ~ 23849924 (-) True LOC110514697
XM_036972601.1 mRNA downstream 331756 23841341 ~ 23848800 (-) False LOC110514697
XM_021593956.2 mRNA downstream 340044 23832402 ~ 23840512 (-) True LOC100136261
XM_021594009.2 mRNA upstream 5655 24189209 ~ 24198813 (-) False LOC110514831
XM_036972836.1 mRNA upstream 5655 24189209 ~ 24198813 (-) False LOC110514831
XM_036972840.1 mRNA upstream 5655 24189209 ~ 24198813 (-) True LOC110514831
XM_021594018.2 mRNA upstream 33951 24217505 ~ 24221711 (-) False gpatch4
XM_021594020.2 mRNA upstream 33951 24217505 ~ 24221727 (-) True gpatch4
TU271267 other downstream 400421 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 991525 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1605567 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 2425055 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 2437145 21738845 ~ 21743411 (-) True G235092
TU271769 other upstream 337665 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 586008 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 586150 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 752962 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 753113 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile