RNA id: TU270683


Basic Information

Item Value
RNA id TU270683
length 427
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G236838
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24215381 ~ 24215807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgattcttcacaaaaaaatacagttttatatcttcatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtattttgatttccccatgatgtcaagtaaagaggcagtgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaatgagcttatcagaagcttctaaagccatgacttcattttctggaattttccaagctgtttaaaggcacagtcaacagagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctttaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270619 lncRNA upstream 30725 24184352 ~ 24184656 (+) True G236782
TU270635 lncRNA upstream 113026 24102140 ~ 24102355 (+) True G236798
TU270597 lncRNA upstream 114523 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA upstream 146883 24065964 ~ 24068498 (+) True G236762
TU270586 lncRNA upstream 162258 24052892 ~ 24053123 (+) True G236752
TU270687 lncRNA downstream 6466 24222273 ~ 24222648 (+) True G236842
TU270689 lncRNA downstream 8172 24223979 ~ 24224206 (+) True G236844
TU270614 lncRNA downstream 43276 24259083 ~ 24261294 (+) True LOC110514864
TU270716 lncRNA downstream 76190 24291997 ~ 24292241 (+) True G236871
TU270622 lncRNA downstream 91308 24307115 ~ 24307796 (+) False LOC110514930
XR_005041909.1 mRNA upstream 7752 24204483 ~ 24207629 (+) True LOC110505138
XM_036972747.1 mRNA upstream 31125 24105520 ~ 24184256 (+) False LOC110503950
XM_021594024.2 mRNA downstream 11105 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA downstream 11105 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA downstream 11105 24226912 ~ 24259547 (+) False LOC110514864
XM_021594059.2 mRNA downstream 83900 24299707 ~ 24313412 (+) False LOC110514930
LOC118947812 mRNA downstream 126755 24342562 ~ 24352353 (+) True LOC118947812
TU270587 other upstream 159714 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 286294 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 420186 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 533598 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 549859 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 559472 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 979480 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1324962 25540769 ~ 25541613 (+) True G239026

Expression Profile