RNA id: TU270687


Basic Information

Item Value
RNA id TU270687
length 376
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G236842
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24222273 ~ 24222648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatcatagaataatagtgaagaaatcaaaactatgaaattacacatatggaatcatgtagtaaccaaaagagtgttaaacaaatcaaaatatattttatatttgagattcttcaaagtagccaccctttgccttgacaactttgcacacccttggcattctctcaaccagcttcacctggaatgctttttcaacagtcttgaaggagttaccacatacgctgagcacttgttggctgctttttcttccaactcatcccaaaccatctcaattgggttgaggttgggtgattgtggaggccaggtcatctgatgcagcactctatcactcttgTTATTtgtggtcaaatagcccttacacagcctggaggtgtgtt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270683 lncRNA upstream 6466 24215381 ~ 24215807 (+) True G236838
TU270619 lncRNA upstream 37617 24184352 ~ 24184656 (+) True G236782
TU270635 lncRNA upstream 119918 24102140 ~ 24102355 (+) True G236798
TU270597 lncRNA upstream 121415 24065964 ~ 24100858 (+) False G236762
TU270598 lncRNA upstream 153775 24065964 ~ 24068498 (+) True G236762
TU270689 lncRNA downstream 1331 24223979 ~ 24224206 (+) True G236844
TU270614 lncRNA downstream 36435 24259083 ~ 24261294 (+) True LOC110514864
TU270716 lncRNA downstream 69349 24291997 ~ 24292241 (+) True G236871
TU270622 lncRNA downstream 84467 24307115 ~ 24307796 (+) False LOC110514930
TU270621 lncRNA downstream 85251 24307899 ~ 24309002 (+) False LOC110514930
XR_005041909.1 mRNA upstream 14644 24204483 ~ 24207629 (+) True LOC110505138
XM_036972815.1 mRNA upstream 38017 24105520 ~ 24184256 (+) False LOC110503950
XM_021594024.2 mRNA downstream 4264 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA downstream 4264 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA downstream 4264 24226912 ~ 24259547 (+) False LOC110514864
XM_021594059.2 mRNA downstream 77059 24299707 ~ 24313412 (+) False LOC110514930
LOC118947812 mRNA downstream 119914 24342562 ~ 24352353 (+) True LOC118947812
TU270587 other upstream 166606 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 293186 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 427078 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 526757 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 543018 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 552631 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 972639 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1318121 25540769 ~ 25541613 (+) True G239026

Expression Profile