RNA id: TU271659


Basic Information

Item Value
RNA id TU271659
length 3330
lncRNA type antisense_over
GC content 0.32
exon number 1
gene id G237723
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24305682 ~ 24309011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAATTCAAAATGATATTTTCACCTTGTAAAAATAATCAAAATCCCACTTATATAGCAGGCATTTGACTGGACGTAAATtactgatatatatatacacagatgCGCAGAATCCTTTCTCATAAAGCACAATGCAAATTTCTCCCACAGCCTCTAAAACAGTGAGACTCTCTAAAAAGCCCTCATTAAACCAGTGCAAACTCAACCAAGTCATCAgtactgactgaatggatgagaGGTCTCCcataataccactactacaagGAATAACAATAATTATATTAGAAAAACATGAAAGGGAAACCTTACAGTATGTGCATGGCTTTCAAAATCTATGAAGAAATATTCACCATCAGCGGTCAGTTTGGTATTAATTATGTGTTTTCTCATAAGGTGCTTTACTCTATATTTTAATGTAAAGTCTTTATGAGCCTAATTTCCCAATTCCATTTAATCCCACCCAACCCGGTTGATTCACATTCTTTTCTGACAAATAGTTACGTTAAAGTTTTTTTTAAGGGGCAATACTATTGAAGGCCTACTGTATGTCACTAAACTTTCATGCCAAAGTGAAAGCAATATTAATATTTTAATACAAAATATtaaggcttaaaacaaaataaaaaagaaTAGAAAATACTATATTCATTTAACAGCGTTATACTGCCTTGAAATTGTCATTGAAAGTTCAGACCAAACCACTGTGCAGTTCTCCCCATTCATAAATATTAAATTAATTTCTATATATGTCATAGAATTTAGATACTCTGAAAGTACAATTTCTTCACAGTCCACAGACAACAGGAGTGGTCTGCTGACAATACAATGGGGGAAAAGTGGGCTCTGTTGCGGCCTAGACTAGGGACAACAGTCTATTGTAACTATTCGCCATATTTTGATGGACAGAAGTTGAGCAAAAGTGTTCTCCTGAAATAACGCAATAGAGCGATCTGATGCAGTGTTAGTGGGAGAGCAGCTGAATCACCTTGTTCACCTGCCACCACCAGCAAACATGAGGCAGCAGCCTTCTAACTACCCCTTCACTGAAGACACAGAAATGACCCCTCTCACAAAGACTAGATCTGCAGGTTCTCTTTTTTTGGGGagcagccatctctctctccacccccaaaAGCCCCCCTCTTATCCTCCAACGGCTCtaatccccctccctccctctgaaaTCCCCAGGCTGGGGCTAAGGCAGAGGCAAAGGGTGTGTAATTTGATTCAGCATGAGTGGTGGCTAAATGGGGCGTTTCCTCCGCTTTCCTGTCAATTACAATCGTCTGATTTCATTCTGAAGGCCCAGTGCTAGCCTGCCATTGGCTAAGCCTGTGTGATTGTGGTGAGTGGGCAGCTGCAGGATGTCCCATACAGACGGGAGATAAAGGGGGGGGGCTCTCTATGGAAACTTCGATCTGCGCTCGCTCTCTGTCACAAAGGCCTCCATCCAAATTGGGGTGGGGTGATGAACTCCAAGTGATCAGACTCCTCGTACTCTTAAATGATATATGTCTGCATGCTTTCAAACCCTTATCTTATTGAGAACACATGGAGACATCTAGTTCAGTGGGAAATGTCAAAGAATTGGATCTGTGTGGCAGAATTTACACTAGGTAATTACTGTATCTACTGACACTGTTGATATCCTTTCTTTCTCCAAAGTCCCCTCACTCTCATTTCAGAGCTGGCAGCCTGAAATATGCTGCTTTTTTCCTGAGTGTTGGGACAAAGGAGGCCCCTCTCCCCAGTAGGGATAGCTCAGAGCagcagagaaggaaagagggagggggatatGGAAGGAGGGGTCCCATTCGCCCAGCTGCACCCAGACTGGACCTTCTGTGCCTGTGACAGAGGGATGGGGCGGTCAGCACCAGGTTCCCCCGCACAGTCCGCACCTGGACCGGACAATTTGCCTAATTATCAATGAGTCTCTCCGGGCCGTGTCCAAGCACTCCGGGCCCACGCCACCACTGGGCATAGACAATACGCCCCACACAGGGAAGCAATGCATTGTGGGTCGGCTGCAGTCATTACTACCTTCAATAGCCAGCGATCGAACAgtaagcaggggggggggggggactcccaAAGAAAATAGAAAAAGAGGGGGCTAAAAAAGACCTCAAAGTTGAGGTCACATCCACAGTGCGCTATTAAACACCTGCTCCTGCACAGCTCTGATAATTATAGGCCTCTGAGCTAAAATACAAAGCTGCTGGACGGGGGTGGCGAGGGAGCTCTGTGGATGGTGGTACTGTATTCTAGGAGCTTTTCGCCCATTTAGGCACACTCTATTACCAATTCAGAGAACagctcagtgttttcctcagCTTCTGTCCACTCTAATGGCTGACGCTCTAACTGCGCAAACCTCAGAGAGATGCCTGTCAAAAGTGGCTCTCGTTTTTGTCCTACATCGTTCAGATAACAGCTAAATTACCACATAAGACAATAAAGTGGGTATTAGTTGGCTTTGAAACTAGTCCGTCGGGGAGACGATTCTCCCAAATTAGCCAACTGGAAGAATTCCAAGGCTTTTGGCCTCACAAATGAAATCAGTGCTTAACACCGGCGAAATAAACATGCTTTTCAAGTGCCACGAGGAACAGGCATCGCTGAAACTTTTCACCAAACTGCAGTGATATTCAAGGTGTAACAGAAGTGAACATTTCAGCAATACAATGTGTAGCATTCATTCACCTCTTTGTGAAAAACGAAATCTATAAAACATATGTGCATGAAGAAAGGCGTTTGTCTGCTATTCTGTCCTATATTGTTACCATTCTTACAGGTGTTTAGGGAGGACTACCAGGTATAACAACGAGCTTGTAAAGGGATACAAATGTCAGAAAGGTGACAATGATGGAATAGTCTGTCTTTCGATTGGAACAAATTTAGACTTTCAATGACAATATCACAGTTTGttccattttttgttgttgccacaTTGGGGGATTTACCTTTTCATCAGCTACGTCATTTTTCTGGATGATTGACAATCATTAATCTGACTATCCGAAACTAAGACGATTGTAAGGTGCAATGAAAGATTAAATATTTTTCCTTCTGTTTGATTTTGACTTCCTATATCATTCAGTTACAGATAAGATACCAGGGAGTTAAACTGAACCTCAATGATcacctccttcctttcctccataTAAAACAACTTCATGGTAAAATAAATCTGAATCGTAAACTGTTCACGTTCCTACTACTCCGCCCACACTGTGATTCGTGAAtgaaaacagcagcagtaaaaaaaaacagaagaaaTGCTAGGTACTATACTTTTCTTATAAACAAAACttttataaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271638 lncRNA downstream 5029 24300193 ~ 24300653 (-) False G237714
TU271637 lncRNA downstream 5029 24300247 ~ 24300653 (-) False G237714
TU271640 lncRNA downstream 5070 24300193 ~ 24300612 (-) False G237714
TU271639 lncRNA downstream 5070 24300247 ~ 24300612 (-) True G237714
TU271628 lncRNA downstream 19892 24285557 ~ 24285790 (-) True G237705
TU271668 lncRNA upstream 40095 24349106 ~ 24349359 (-) True G237732
TU271765 lncRNA upstream 205100 24514111 ~ 24514321 (-) True G237828
TU271766 lncRNA upstream 206184 24515195 ~ 24515433 (-) True G237829
TU271777 lncRNA upstream 217773 24526784 ~ 24526988 (-) True G237837
TU271778 lncRNA upstream 218289 24527300 ~ 24527563 (-) True G237838
XM_021594042.2 mRNA downstream 19064 24259081 ~ 24286618 (-) True LOC110514890
XM_021594039.2 mRNA downstream 22883 24259081 ~ 24282799 (-) False LOC110514890
XM_021594020.2 mRNA downstream 83955 24217505 ~ 24221727 (-) True gpatch4
XM_021594018.2 mRNA downstream 83971 24217505 ~ 24221711 (-) False gpatch4
XM_036972840.1 mRNA downstream 106869 24189209 ~ 24198813 (-) True LOC110514831
XM_021594060.2 mRNA upstream 4544 24313555 ~ 24323816 (-) True LOC110514944
XM_021594062.2 mRNA upstream 11733 24320744 ~ 24330914 (-) True LOC110514960
NM_001160633.2 mRNA upstream 22515 24331526 ~ 24336143 (-) True mapip
XM_021594051.2 mRNA upstream 27713 24336724 ~ 24342873 (-) True LOC110514914
XM_021594076.2 mRNA upstream 52472 24361483 ~ 24373454 (-) False LOC110514995
TU271573 other downstream 121718 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 122128 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 525547 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1116651 23157109 ~ 23189031 (-) True G237047
TU269608 other downstream 1730693 22573833 ~ 22574989 (-) True G235881
TU271769 other upstream 212208 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 460551 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 460693 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 627505 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 627656 24936667 ~ 24952182 (-) False LOC110515208

Expression Profile