RNA id: TU270729


Basic Information

Item Value
RNA id TU270729
length 240
lncRNA type intronic
GC content 0.43
exon number 1
gene id G236884
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24344514 ~ 24344753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcTAAACTGCTatgaaatacattttccaaaaccaaaaatatagaattttcagctgtttgaagctggtgtagcctacaaaaccgaaagtaaaagacgcaaaaacttaCCTTAAAACCGGGAGCCATAGCCCACATAAAACAAGTCTACCGCTTATTTATATGAAAAGAATGCACTCACTACTATAAATCGATCAAATATGTAAAACATCTTAGACttactttcaatgagaatgacagtaGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270612 lncRNA upstream 31148 24309156 ~ 24313366 (+) True LOC110514930
TU270621 lncRNA upstream 35512 24307899 ~ 24309002 (+) False LOC110514930
TU270622 lncRNA upstream 36718 24307115 ~ 24307796 (+) False LOC110514930
TU270716 lncRNA upstream 52273 24291997 ~ 24292241 (+) True G236871
TU270614 lncRNA upstream 83220 24259083 ~ 24261294 (+) True LOC110514864
TU270764 lncRNA downstream 55867 24400620 ~ 24483407 (+) True G236919
TU270786 lncRNA downstream 89885 24434638 ~ 24455342 (+) True G236939
TU270821 lncRNA downstream 156476 24501229 ~ 24501489 (+) True G236974
TU270824 lncRNA downstream 159889 24504642 ~ 24504902 (+) True G236977
TU270828 lncRNA downstream 164117 24508870 ~ 24509501 (+) True G236981
XM_021594059.2 mRNA upstream 31102 24299707 ~ 24313412 (+) False LOC110514930
XM_021594024.2 mRNA upstream 84967 24226912 ~ 24259547 (+) False LOC110514864
XM_036972869.1 mRNA upstream 84967 24226912 ~ 24259547 (+) False LOC110514864
XM_036972877.1 mRNA upstream 84967 24226912 ~ 24259547 (+) False LOC110514864
XR_005041909.1 mRNA upstream 136885 24204483 ~ 24207629 (+) True LOC110505138
XM_021594156.2 mRNA downstream 366730 24711483 ~ 24718629 (+) False LOC110515127
XM_021594172.2 mRNA downstream 472822 24817575 ~ 24819244 (+) True LOC110515164
XM_036973022.1 mRNA downstream 502774 24847527 ~ 24876184 (+) False LOC110503966
XM_036973032.1 mRNA downstream 502777 24847530 ~ 24876184 (+) True LOC110503966
XR_005042058.1 mRNA downstream 629873 24974626 ~ 24976484 (+) True LOC118948035
TU270587 other upstream 288847 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 415427 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 549319 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 404652 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 420913 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 430526 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 850534 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1196016 25540769 ~ 25541613 (+) True G239026

Expression Profile