RNA id: TU270828



Basic Information


Item Value
RNA id TU270828
length 632
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G236981
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24508870 ~ 24509501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcgtcctcgagttgctccgacaacccctggtaaaaagccgcttgtagtgactcctcattccaaccactctccacagacaatgtcctgaactcgatcataaagtctgccacactgcgagcTCCTTGGCGAAGAGTGAACAAACGTTTAGCTGCGTCCTTACCTCGGACTGGATGGTCAAAAAGCCTTCTCATCTCTCCCGTGAATTCCTGGTATGAAGCCATGCAGGTCCCCTGTCGTTCCCAAACGGCTGAAGCCCAATCCAGAGCTCTTCCACGCAGCAGTTCAATAACAAAGGCTATCCTAGCCTTGTCAGTGGCGTAAGAATGGGGCTGCAGATCAAACACTAACCCACACTGCATAAGAAACGAACGGCATCTTCCCAAATCCCCTTCATATTTATCAGGCGTCGGTACCTTGGGTTCACGGAAGGAAACCGCATCAGGCACGGCAGGTGAGATGGGTGAAACAGGTGGTGAATGAATCACCAGCAAactgagctgatcctggatctgtgtcAAACTAGCAGATCATTTCTGGATTGGAACCGCTATCTCCTGTAGCGCCGTCTTGTGTTGTCCCACTGTCTTCCCCTGCTGGGTAATGGCATGGCAAACGGAATCCAGGTCCGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU270824 lncRNA upstream 3968 24504642 ~ 24504902 (+) True G236977
TU270821 lncRNA upstream 7381 24501229 ~ 24501489 (+) True G236974
TU270764 lncRNA upstream 25463 24400620 ~ 24483407 (+) True G236919
TU270786 lncRNA upstream 53528 24434638 ~ 24455342 (+) True G236939
TU270729 lncRNA upstream 164117 24344514 ~ 24344753 (+) True G236884
TU270833 lncRNA downstream 5310 24514811 ~ 24515107 (+) True G236986
TU270834 lncRNA downstream 6590 24516091 ~ 24516406 (+) True G236987
TU270835 lncRNA downstream 6942 24516443 ~ 24516932 (+) True G236988
TU270836 lncRNA downstream 7745 24517246 ~ 24517451 (+) True G236989
TU270837 lncRNA downstream 10199 24519700 ~ 24519986 (+) True G236990
LOC118947812 mRNA upstream 156517 24342562 ~ 24352353 (+) True LOC118947812
XM_021594059.2 mRNA upstream 195458 24299707 ~ 24313412 (+) False LOC110514930
XM_021594024.2 mRNA upstream 249323 24226912 ~ 24259547 (+) False LOC110514864
XM_021594156.2 mRNA downstream 201982 24711483 ~ 24718629 (+) False LOC110515127
XM_021594172.2 mRNA downstream 308074 24817575 ~ 24819244 (+) True LOC110515164
XM_036973022.1 mRNA downstream 338026 24847527 ~ 24876184 (+) False LOC110503966
XM_036973032.1 mRNA downstream 338029 24847530 ~ 24876184 (+) True LOC110503966
XR_005042058.1 mRNA downstream 465125 24974626 ~ 24976484 (+) True LOC118948035
TU270587 other upstream 453203 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 579783 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 713675 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 239904 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 256165 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 265778 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 685786 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1031268 25540769 ~ 25541613 (+) True G239026

Expression Profile