RNA id: TU270834



Basic Information


Item Value
RNA id TU270834
length 316
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G236987
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24516091 ~ 24516406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttgtctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagtaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtcagattaaaggccagatttgtgcaatatacgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU270833 lncRNA upstream 984 24514811 ~ 24515107 (+) True G236986
TU270828 lncRNA upstream 6590 24508870 ~ 24509501 (+) True G236981
TU270824 lncRNA upstream 11189 24504642 ~ 24504902 (+) True G236977
TU270821 lncRNA upstream 14602 24501229 ~ 24501489 (+) True G236974
TU270764 lncRNA upstream 32684 24400620 ~ 24483407 (+) True G236919
TU270835 lncRNA downstream 37 24516443 ~ 24516932 (+) True G236988
TU270836 lncRNA downstream 840 24517246 ~ 24517451 (+) True G236989
TU270837 lncRNA downstream 3294 24519700 ~ 24519986 (+) True G236990
TU271783 lncRNA downstream 14492 24530898 ~ 24531207 (+) True G237843
TU271785 lncRNA downstream 16129 24532535 ~ 24532944 (+) True G237845
LOC118947812 mRNA upstream 163738 24342562 ~ 24352353 (+) True LOC118947812
XM_021594059.2 mRNA upstream 202679 24299707 ~ 24313412 (+) False LOC110514930
XM_021594024.2 mRNA upstream 256544 24226912 ~ 24259547 (+) False LOC110514864
XM_021594156.2 mRNA downstream 195077 24711483 ~ 24718629 (+) False LOC110515127
XM_021594172.2 mRNA downstream 301169 24817575 ~ 24819244 (+) True LOC110515164
XM_036973022.1 mRNA downstream 331121 24847527 ~ 24876184 (+) False LOC110503966
XM_036973032.1 mRNA downstream 331124 24847530 ~ 24876184 (+) True LOC110503966
XR_005042058.1 mRNA downstream 458220 24974626 ~ 24976484 (+) True LOC118948035
TU270587 other upstream 460424 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 587004 23908750 ~ 23929087 (+) True LOC110514733
TU270430 other upstream 720896 23792797 ~ 23795195 (+) False LOC110514613
TU271992 other downstream 232999 24749405 ~ 24750383 (+) True G238034
TU272005 other downstream 249260 24765666 ~ 24766363 (+) True G238047
TU272008 other downstream 258873 24775279 ~ 24775945 (+) True G238050
TU272577 other downstream 678881 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 1024363 25540769 ~ 25541613 (+) True G239026

Expression Profile