RNA id: TCONS_00029264


Basic Information

Item Value
RNA id TCONS_00029264
length 5235
RNA type mRNA
GC content 0.38
exon number 15
gene id XLOC_014832
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27283072 ~ 27339872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCACAAGTCAAGTGATCAAGTCATCGGTGATGTTTAATCCTTTGGATCAGAGCAATGTCGCTGTTGAAAGTGCAGAGGATGCTGAATTGAAGGGGCCAGTGATTGACAGGAAATGTTCTCGCTGTAATAAAGAGGGAATGGTTTATCATACAAGACAGATGAGATCTGCAGATGAAGGGCAAACTGTTTTCTTCACATGTATTCACTGCAGGTTCCAAGAAAAGGAAGACTCATGAGAAATGTGTTGCTGCTGCTGTCTTATATTGATTGCTAGAATTTAAttgtataaaataatgtaaaggtTTTGTTTGTATTCATACTATTCAGTGTTAATAAAAATTATCAAAAGAATGTTTGTCTTTTATATCTAATATgtaattttctttatatatagTATAAGGAATGCATAATAAacactatttataattttaaaaataaaagtttgtaaaagAAATACGGTTTTCCGAAAAGTCCCTTCCCACACGCGTGAGCCAATCAGCCTTTATGTTTCAGCGATCACGTGATCGTACAACATGGCTTCACACTGTCCGAGCTGAATGGCTAGATGACTGTTCATGAAGAAGTACAATGATGTGTATCACTTTATGCACTATTTAGTGCTTCCTAGCGCCTGTGAAACAAGGTAAGCAAATTGACTGTATAATAAATCTAAGTTTAAAGCGAGAATGACTACGATATATGATACATACATTTTCTAGGCATGAACTCAAGGCAGCAAGAATTTAAAGCATCTATTGTTCCTTAAATGCTCATTTcaatatattgttgttgttacctTTGATATCAGTGTGTTTACGTTAGTGTAACCAACAAAGTAGATGCACTATAACATCTCAGTCAAAGATAGTGAACAATATGACTCCGTTTGACAGATAATGTTTTCTGATAGAGCCTAATGCAGGTCATTTTGATTTTTGTCTTTACATTTGCCCGTTTTTACCGTTTACAGATGAAGCTTCGCGTTCAGCTTCAGTGTAAGAACTTGCACGAGTATCTGAAAGAACTGACCCCAGAAATCCTCGACAGGCTCTACAATCACCCAGCAACATGTCTAGCAGTATACAGGGAACTTCCACCACTGGCAAAGAATTACGTGATGCGCATGCTGTTTTTAGACCATCCACTCCCCCAGGCTGCGGTAGCCCTGTGGGTTAAAAAAGACAGTCAAAAAGACCATGATCAATGTGTGTCGGTGTTAACTGGGCTACGGCTCTGGCACAGTCAGCATCTTCAAGGTGGACTTCAAGGTTTCGTGCTCAACCCCGTGTTTAAGGACAACCTGAGAATAGCACTTTTAGGCGGTGGTAAACCGTGGGCAGACGAGGGTGCCAATCTGGGTCCCGATCGGCATGCGAGGGATGTAGAGAGTCTGGACCGCTATGCTATGGAGCGCTGGGAGGTCATCCTTCACTTCATGGTGGGCTCTCCTAGCGCAGCTGTCAGTCAGGATCTGGCTCAGCTCCTCATACAGGCCGGGCTCATGAAGAGCGAGACTGGTGAGGCTCCATGCATCACATCAGCAGGgtttcagttcctgctgctggaCACGGCATCTCAGTTGTGGTACTTCACCCTGCAGTACCTCAAAACAGCACAGTCGAGAGGAATGGACCTGGTGGAGATTCTTTCCTTTTTGTTCCAGCTGAGTTTTTCCACTCTTGGAAGGGATTATTCTGTGGAGGGCATGAGCGAGTCCCTGCTCACATTTTTGCAGCATCTACGAGAGTTTGGTCTGGTTTTTCAAAGAAAGAGGAAGTCAAGAAGGTACTACCCTACGAGACTCGCCATAACTCTCGCTGCAGGAGTCACTGCAAACCCAGCCTCGGGATCTGCCTCTTCTGCACTGGGAGCAATACCAGGAACAGGAGACACTGGATTCATCGTTGTAGAAACTAATTATCGCATATATGCCTATACAAACTCTGAACTTCAGATTGCACTGGTCGCTCTGTTTAGTGAGATGTTGTATCGGTTTCCTAACCTGGTGGTTGCACAGGTCACCCGAGAGTCTGTGCAGCAGGCCATCAGTAACGGCATCACCGCACAGCAGattattCACTTCTTACGGACCCGAGCACACCCAGTAATGCTTAAACAGACCCCCGTTCTccccccaaccatcacagatcaGATCAGACTGTGGGAGCTTGAGAAAGATCGCTTGCAGTTTACCGAGGGAGTGTTATACAACCAGTTTTTATCCCAGGCTGATTTCGAAGTGTTGCGGGACAGggctcagGGTTTAGGAGTGCTGGTGTGGCAGAATCCCGCTCACAGGGTCATGGTGGTGACTCCTCATGGACACAGCGAGGTTAAGAGATTCTGGAAGAGACAAAAAAGCCATTCATAAGGGAAAAACTTAAAGTATGCAGTAAGAAACCTAGTAAACAGTAGGTTCATGTAATCTTTTAGCTCTGAAAGATTACATAAACTTACTGTATACTTATTATTGAATTTATGCTTACAAATGAACAGGAGGActatttttgtgcattttactGCAAGTTgatctgggtaaaaaaaacaaagtttctaTGCATAGTTTGAAGCCTTTTGCTGTTCATGTGACAGTATGTGCATTATTATTCTGTTATTGACTTGATTTCGCTTTTGTAGTGTATAAATTTGCTACACGTTTGTGTCCAAGGTAAACTGACCAAAATAAACACTGTTTACAATGAGCGCTCTCACTTTTGTTTGATAACATGGAAATTTAGTCAGTGAAATTGACAACATGGAAATTTAGGCCATGAAATTTACATTTCAGTCACAAGTAATTAGGAGGGAAATAACAGAGTTCAGTTTCAgatataaatttgaataaattagTCTTAATGGGCAAATGTTACAAAAACATCCCGGTCATggtttttaagaattattattgaaataaaagtatatggtataataaatgttaatttttaggaCAGTTCCTTAAAAATGACTCTAATGGTTCTCCCAAACAACATCATTCTTCCAAACAACTATTCattttgtatataatattattacgtaGTATGTCATTTTAAACAGGGATTGAAAGCAATAAACAACTTGTTTTCAGATGTGCTTAATTATTAAGCAGGTTTTCCTATTTTTAAATGGCCCAAAATAAGATGCAATTCTTAATGAACAGTAAAAGTATCCACAAGATGTTTgcagtattttagaaactgtatGCTTACTGGGGTAACGGTGAAAAATTAGATTAAAACAGGTCAAAAATAAATTGAGTTCATTtgcaaaacaataatttaaaaaattgatttgtttatattaccaTGATTTAAGAACATGAAtaaaaaccaattaaaaaaaataaagattttaaaagctACAATGAAAAAAGAATgagaagtacaaaaaaaaaaaaaaaaaaaacagagaagaaAAATACAAGAGAAAATTATGCTGGTCCCTCTATCTCCTACCTTGAAAGGTTAATTTTCTTGCCCAGCTTTTCATGCCAAAACATTGAAATTTGGGACTgtttggtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataccttgtatgtaatgttttaaagtaatGTGAAGAGAACATCTgaaccatatatatttttattacactttatcaatttgtgtctgattattttaaacacattttaaaggaTGTTATAAATCTCTACTTGAGCAAAAGGAATAGACTCATTCATGTATACTGAAGAATTTATAAAGGAGTGTTCATCTACAGTTTGCctgattataaacattttatttgcacttATTTTTTCCCCTGATTGTTCcccaaataaaaaaagttttactgtAATGCCAAACAAAGGAGTTCTTGATTGAATTGCTATTAGTTCTGGACTGGTAAATTGGCATGTTGAATTATGCCTTTCTAAGTaggttaataaaaatgtatatcaaATAAGAACAGTTTgtggttaattaaaaaaaaaggtatttaccCTAATAACTTGCATAGTTTTATGTTGTATATGacatttttataagtgaaaattcacaccatttttttgtttacatttttatttggttACTTTATTGGTTGTTAGCCCACAATTTAACTAATCAATGTCATTAGACGTCTGAAATTAAATAAGCAAACAGATTCTGAATGTGGCTTATGCCCTAATGAATTTAACGTTAGTATTCATTTACAAACAAGGCAGAAACTTTAAAGTTGATTTTCATGGAAAATGTTTGTAAGGACCGAAACAAAAAGGCAGCtaactagagagagagagagagagagagagaaaaaaaaagaaagacatgaaAAAACGGGAACTACCATTGACAATAACAGTGACCGCTATCACTGTGTTTATGATCCCTGAGCAGTGCACTCTGGAGAGGCTGTGATTTCTGCAGTTAGCCGTGAAGCTAACGGTTCAGCCCGGGTCATTCTGCGCTGTCAGCTCCACGGCATGACGCTGTCGCTGCAAACAACACGCCTGCGCCGTTAATTCACACTGATTCACCGATTATGTAGCACTTTACCGACAGATTCTGgggtaaatacatatttataagcATGGCAAACATTTAAGCGCCTGCATATTCTGACTTGTAAGAGCAAAACGGGTCATTCTCGAGGCCACGGATGGAACCGGGGCGGCAGCGTGAGAACCCCCCCGGATCCGGGGAGCCCGAGTCGGGGGAGTGGAGAGAGGAGAGCGCCGGGTTGGAGGCTGGAGAAATAGACGACACCCTGAAAAACAGAAGCGGGGATGGAGGAAACGAGGAAACCACGAGCAAAACCGACAACACGGAAGCGGTGGAGAAAGATAAGACTGAGTTTGATGAAGATGAGGAGCAATATGAGGAAGAGCTGGACCCAAGGATCCAGGTATTGAGATAAACTTGATGTTGTGACAGGTGCATTGATTTATGACTCGTATTATCCACAGTATGCAATTAGTTGTTTATATTAGCACTGCAGGTTATTTATGGGCATTTGCTCATATAACGCTCATATAACGCTCCTTTCGTCATTTAgataattttattgttatattaataGTAAATGATAGTACATTTTTCTTCCCTGTTGTTCCATGTGTCAGGAGGAGCTGGAACACTTGAATCAGGCCAGTGATGAGATCAACAGACTGGAACTACAGCTGGAT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko05203 Viral carcinogenesis
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-6779 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair and phosphorylation of RNA polymerase II C-terminal domain. Predicted to act upstream of or within DNA repair and intracellular signal transduction. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Orthologous to human GTF2H4 (general transcription factor IIH subunit 4).

Ensembl:

ensembl_id ENSDART00000176885

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029258 lncRNA downstream 307174 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029254 lncRNA downstream 396387 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029248 lncRNA downstream 490228 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00030237 lncRNA downstream 506718 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029779 lncRNA downstream 525657 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029277 lncRNA upstream 117460 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00030238 lncRNA upstream 117460 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00030239 lncRNA upstream 127838 27463930 ~ 27469200 (-) False XLOC_014836
TCONS_00030240 lncRNA upstream 127838 27463930 ~ 27469230 (-) False XLOC_014836
TCONS_00030241 lncRNA upstream 127838 27463930 ~ 27469235 (-) False XLOC_014836
TCONS_00029260 mRNA downstream 52835 27041268 ~ 27261102 (-) True XLOC_014830
TCONS_00029259 mRNA downstream 117847 27040533 ~ 27196090 (-) False XLOC_014830
TCONS_00029257 mRNA downstream 307173 26967357 ~ 27006764 (-) False XLOC_014829
TCONS_00029256 mRNA downstream 349589 26957425 ~ 26964348 (-) True XLOC_014828
TCONS_00029255 mRNA downstream 370001 26937543 ~ 26943936 (-) True XLOC_014827
TCONS_00029273 mRNA upstream 30840 27366932 ~ 27391179 (-) False XLOC_014833
TCONS_00029274 mRNA upstream 32153 27368245 ~ 27395531 (-) True XLOC_014833
TCONS_00029275 mRNA upstream 63076 27399168 ~ 27445747 (-) False XLOC_014834
TCONS_00029276 mRNA upstream 63076 27399168 ~ 27448606 (-) True XLOC_014834
TCONS_00029278 mRNA upstream 120875 27456967 ~ 27462720 (-) True XLOC_014835
TCONS_00029261 other downstream 141107 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029249 other downstream 476813 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1795397 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 2164953 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 2253060 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029282 other upstream 128324 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 129012 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 129244 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029289 other upstream 132357 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029297 other upstream 235614 27571706 ~ 27575094 (-) True XLOC_014839

Expression Profile

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