RNA id: TU272008


Basic Information

Item Value
RNA id TU272008
length 283
RNA type TUCP
GC content 0.44
exon number 2
gene id G238050
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24775279 ~ 24775945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGAGTCCCTGAGCATGGTGTCTGCCACCACTACTATGGGCCTCCTCAAGACATGGGCCAGGACGAACACATGGAACTCCTCCAGACTCTCGTACACAGGCTCCTCTGATGACTCCGTCCTGTACATAGGAAACGAACGGGGTCAGATCAGGAAACACACAGGAAGTGACATAGGGTCTGCTGCCACCTCCACCTGCGTCTCAGCGACTCCCTCTCCTGGCCGTGGTCCATCAGTGCATACAGAGACTTCCGCAGCATCAGGTCGCGGTCATGAAAGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271942 lncRNA upstream 4753 24769614 ~ 24770526 (+) True G237985
TU271941 lncRNA upstream 9927 24764810 ~ 24765352 (+) True G237984
TU271940 lncRNA upstream 11088 24763698 ~ 24764191 (+) True G237983
TU271972 lncRNA upstream 38077 24736819 ~ 24737202 (+) True G238015
TU271966 lncRNA upstream 44633 24730329 ~ 24730646 (+) True G238009
TU272009 lncRNA downstream 30 24775975 ~ 24776226 (+) True G238051
TU272010 lncRNA downstream 715 24776660 ~ 24776888 (+) True G238052
TU271986 lncRNA downstream 32492 24808437 ~ 24808880 (+) True G238028
TU271991 lncRNA downstream 78824 24854769 ~ 24885461 (+) True G238033
TU271987 lncRNA downstream 128354 24904299 ~ 24905517 (+) True G238029
XM_021594156.2 mRNA upstream 56650 24711483 ~ 24718629 (+) False LOC110515127
LOC118947812 mRNA upstream 422926 24342562 ~ 24352353 (+) True LOC118947812
XM_021594059.2 mRNA upstream 461867 24299707 ~ 24313412 (+) False LOC110514930
XM_036972869.1 mRNA upstream 515732 24226912 ~ 24259547 (+) False LOC110514864
XM_021594172.2 mRNA downstream 41630 24817575 ~ 24819244 (+) True LOC110515164
XM_036973022.1 mRNA downstream 71582 24847527 ~ 24876184 (+) False LOC110503966
XM_036973032.1 mRNA downstream 71585 24847530 ~ 24876184 (+) True LOC110503966
XR_005042058.1 mRNA downstream 198681 24974626 ~ 24976484 (+) True LOC118948035
XM_036973048.1 mRNA downstream 300394 25076339 ~ 25101218 (+) False LOC110515267
TU272005 other upstream 8916 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 24896 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 719612 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 846192 23908750 ~ 23929087 (+) True LOC110514733
TU270431 other upstream 980129 23792797 ~ 23795150 (+) False LOC110514613
TU272577 other downstream 419342 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 764824 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1437697 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1551463 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1551463 26327408 ~ 26328025 (+) True G239752

Expression Profile