RNA id: TCONS_00029266


Basic Information

Item Value
RNA id TCONS_00029266
length 677
lncRNA type retained_intron
GC content 0.33
exon number 2
gene id XLOC_014832
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27283072 ~ 27339872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACATGGCTTCACACTGTCCGAGCTGAATGGCTAGATGACTGTTCATGAAGAAGTACAATGATGTGTATCACTTTATGCACTATTTAGTGCTTCCTAGCGCCTGTGAAACAAGATGAAGCTTCGCGTTCAGCTTCAGTGTAAGAACTTGCACGAGTATCTGAAAGAACTGACCCCAGAAATCCTCGACAGGCTCTACAATCACCCAGCAACATGTCTAGCAGTATACAGGTCCTTCTGTTATACACGCATTCATATTTACGTGTACACTCATAATGTTTTGCCTcttgtttaaactgcttatttaaaataagctgagaCAACTCGTTTCTTTAGATTTCTTTGGGAGAACCTAATTATATTAAGTTAATGTATACTCAAATTTGTTAAGCCAACTTAATTGATGTACGTTGTGACAACacgaatgaattgtgtggaactttaTTTTGATCTGATTAGATCACATACTGTTCAAGCAAGTGGAGTTTATTTGGAAATAAAAAGCACAAATATTTTAGTAAACAGCAGTTCTTGCTTTGCTGTAAAAAGGACTTTTAAAAATGATACTTTCAATGaaatttttgttagttttttttttattttacatcacaatagtttataaattaatattttaaaattatattttctagGGGATGTAATGGTgcaaaattatattt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko05203 Viral carcinogenesis
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-6779 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair and phosphorylation of RNA polymerase II C-terminal domain. Predicted to act upstream of or within DNA repair and intracellular signal transduction. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Orthologous to human GTF2H4 (general transcription factor IIH subunit 4).

Ensembl:

ensembl_id ENSDART00000147134

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029263 lncRNA downstream 18684 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029258 lncRNA downstream 326583 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029254 lncRNA downstream 415796 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029248 lncRNA downstream 509637 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00030237 lncRNA downstream 526127 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029277 lncRNA upstream 119203 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00030238 lncRNA upstream 119203 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00030239 lncRNA upstream 129581 27463930 ~ 27469200 (-) False XLOC_014836
TCONS_00030240 lncRNA upstream 129581 27463930 ~ 27469230 (-) False XLOC_014836
TCONS_00030241 lncRNA upstream 129581 27463930 ~ 27469235 (-) False XLOC_014836
TCONS_00029262 mRNA downstream 18284 27283072 ~ 27315062 (-) False XLOC_014832
TCONS_00029260 mRNA downstream 72244 27041268 ~ 27261102 (-) True XLOC_014830
TCONS_00029259 mRNA downstream 137256 27040533 ~ 27196090 (-) False XLOC_014830
TCONS_00029257 mRNA downstream 326582 26967357 ~ 27006764 (-) False XLOC_014829
TCONS_00029256 mRNA downstream 368998 26957425 ~ 26964348 (-) True XLOC_014828
TCONS_00029267 mRNA upstream 178 27334527 ~ 27339844 (-) False XLOC_014832
TCONS_00029269 mRNA upstream 181 27334530 ~ 27339670 (-) False XLOC_014832
TCONS_00029270 mRNA upstream 181 27334530 ~ 27339845 (-) False XLOC_014832
TCONS_00029271 mRNA upstream 181 27334530 ~ 27339857 (-) False XLOC_014832
TCONS_00029272 mRNA upstream 181 27334530 ~ 27339872 (-) True XLOC_014832
TCONS_00029261 other downstream 160516 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029249 other downstream 496222 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1814806 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 2184362 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 2272469 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029268 other upstream 181 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 130067 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 130755 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 130987 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029289 other upstream 134100 27468449 ~ 27468515 (-) True XLOC_014836

Expression Profile

//