RNA id: TU272416


Basic Information

Item Value
RNA id TU272416
length 270
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G238414
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24928799 ~ 24931448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcaccagataggctgtattaggttttgagttctcacgtttcttgttttttcgttagtttgttcatgtatagtgtcgtgaataaaatacaatgaacaaccaccacgctgcgctttggtccgcctctacttcacaagaagagaatcgttacagaatcacccaccacaacaggaccaagcggtgtggtaatgggcaaaggaaaaagcagcagcaggagcagcgcgaggaggtatggacatgggacgaattagacggaagaggaccctgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272243 lncRNA downstream 159468 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA downstream 160538 24767203 ~ 24768261 (-) False LOC110515154
TU272245 lncRNA downstream 163437 24764812 ~ 24765362 (-) True LOC110515141
TU272237 lncRNA downstream 164066 24763706 ~ 24764733 (-) False LOC110515141
TU272238 lncRNA downstream 164328 24763706 ~ 24764471 (-) False LOC110515141
TU272527 lncRNA upstream 197654 25129102 ~ 25129653 (-) True G238494
TU272545 lncRNA upstream 218102 25149550 ~ 25149823 (-) True G238509
TU272613 lncRNA upstream 239878 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 247188 25178636 ~ 25178846 (-) True G238588
TU272632 lncRNA upstream 257611 25189059 ~ 25189309 (-) True G238593
XM_036973039.1 mRNA downstream 8785 24904264 ~ 24920014 (-) True LOC110515194
XM_021594179.2 mRNA downstream 34886 24884628 ~ 24893913 (-) True LOC110515183
XR_005039843.1 mRNA downstream 84086 24843450 ~ 24844713 (-) True LOC118944507
XR_002472214.2 mRNA downstream 103663 24819843 ~ 24825136 (-) True LOC110515174
XM_021581795.2 mRNA downstream 113332 24808425 ~ 24815467 (-) False LOC100305168
XM_036973045.1 mRNA upstream 6181 24937629 ~ 24996687 (-) False LOC110515208
XM_036973043.1 mRNA upstream 6181 24937629 ~ 25052967 (-) False LOC110515208
XM_036973047.1 mRNA upstream 6181 24937629 ~ 25052968 (-) False LOC110515208
XM_036973042.1 mRNA upstream 6181 24937629 ~ 25052969 (-) False LOC110515208
XM_036973044.1 mRNA upstream 6181 24937629 ~ 25052969 (-) False LOC110515208
TU272241 other downstream 158476 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 158828 24769562 ~ 24769971 (-) False LOC110515154
TU271769 other downstream 407255 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 744835 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 745245 24180556 ~ 24183554 (-) False G237657
TU272446 other upstream 5068 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 5219 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 6181 24937629 ~ 24947005 (-) True LOC110515208
TU272614 other upstream 267640 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 891908 25823356 ~ 25824757 (-) True LOC110515750

Expression Profile