RNA id: TU272169



Basic Information


Item Value
RNA id TU272169
length 214
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G238198
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25123133 ~ 25123346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTTTTCCTCAACTgggtcctcctctctcccccctattTCCTCCCCAACCCCTCTTACACTAATAATGGCCTTTAATTCTGGGTGAGAGGGGACTGACACACGAGTCGACGACGTAGCAGCCCGCAGGAAGTTAGCTGCTTCGATGGCGTACGGGAAACAGGTAGAAGGAAGATGGGAGCACGGCCTGTTATCCACTTGCAGGAATAGGAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU272168 lncRNA upstream 178 25122652 ~ 25122955 (+) True G238197
TU272165 lncRNA upstream 1945 25120872 ~ 25121188 (+) True G238194
TU272167 lncRNA upstream 2475 25120346 ~ 25120658 (+) True G238196
TU272215 lncRNA upstream 12541 25109122 ~ 25110592 (+) True G238238
TU272089 lncRNA upstream 169658 24937604 ~ 24953475 (+) True G238129
TU272166 lncRNA downstream 120 25123466 ~ 25123783 (+) True G238195
TU272170 lncRNA downstream 1731 25125077 ~ 25125397 (+) True G238199
TU272223 lncRNA downstream 3015 25126361 ~ 25126677 (+) True G238243
TU272230 lncRNA downstream 7245 25130591 ~ 25131094 (+) True LOC110505167
TU272231 lncRNA downstream 9694 25133040 ~ 25133241 (+) True G238246
XM_036973070.1 mRNA upstream 3691 25112639 ~ 25119442 (+) False LOC110515353
XM_036973080.1 mRNA upstream 3691 25112670 ~ 25119442 (+) True LOC110515353
XM_036973049.1 mRNA upstream 21915 25076339 ~ 25101218 (+) False LOC110515267
LOC110505167 mRNA downstream 3833 25127179 ~ 25135494 (+) False LOC110505167
XM_036963280.1 mRNA downstream 14410 25137756 ~ 25147306 (+) False LOC100136302
XM_036963272.1 mRNA downstream 14426 25137772 ~ 25147306 (+) False LOC100136302
XM_021581557.2 mRNA downstream 14838 25138184 ~ 25147306 (+) False LOC100136302
XM_036963262.1 mRNA downstream 14838 25138184 ~ 25147306 (+) False LOC100136302
TU272008 other upstream 347188 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 356770 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 372750 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1067466 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1194046 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 71941 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 417423 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1090296 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1204062 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1204062 26327408 ~ 26328025 (+) True G239752

Expression Profile