RNA id: TU272542


Basic Information

Item Value
RNA id TU272542
length 251
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G238506
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25147495 ~ 25147745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaatttatcattttaaaatatcacatttacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttgaaaagatgagaggcctgtaattttcataggtacacttcaactattacagacaaaatgagaaaaatccagaaaatcacattgtagggtttttaatgaatttattttcaaattatggtggaaaataagtatttggtcagtaacaaaagtttctcaatactttgttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272231 lncRNA upstream 14254 25133040 ~ 25133241 (+) True G238246
TU272230 lncRNA upstream 16401 25130591 ~ 25131094 (+) True LOC110505167
TU272223 lncRNA upstream 20818 25126361 ~ 25126677 (+) True G238243
TU272170 lncRNA upstream 22098 25125077 ~ 25125397 (+) True G238199
TU272166 lncRNA upstream 23712 25123466 ~ 25123783 (+) True G238195
TU272555 lncRNA downstream 27045 25174790 ~ 25175404 (+) True G238519
TU272557 lncRNA downstream 28589 25176334 ~ 25176607 (+) True G238521
TU272561 lncRNA downstream 31039 25178784 ~ 25179166 (+) True G238524
TU272562 lncRNA downstream 31842 25179587 ~ 25179819 (+) True G238525
TU272565 lncRNA downstream 34615 25182360 ~ 25182791 (+) True G238528
XM_036963280.1 mRNA upstream 189 25137756 ~ 25147306 (+) False LOC100136302
XM_036963272.1 mRNA upstream 189 25137772 ~ 25147306 (+) False LOC100136302
XM_021581557.2 mRNA upstream 189 25138184 ~ 25147306 (+) False LOC100136302
XM_036963262.1 mRNA upstream 189 25138184 ~ 25147306 (+) False LOC100136302
XM_036963264.1 mRNA upstream 189 25138190 ~ 25147306 (+) False LOC100136302
XR_005042063.1 mRNA downstream 8631 25156376 ~ 25161150 (+) False LOC110515374
XR_005042061.1 mRNA downstream 8637 25156382 ~ 25161150 (+) False LOC110515374
XM_036973108.1 mRNA downstream 10528 25158273 ~ 25159773 (+) False LOC110515374
XM_021594294.2 mRNA downstream 10876 25158621 ~ 25159773 (+) True LOC110515374
XM_021594286.2 mRNA downstream 14495 25162240 ~ 25165365 (+) True vmo1b
TU272008 other upstream 371550 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 381132 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 397112 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1091828 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1218408 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 47542 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 393024 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1065897 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1179663 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1179663 26327408 ~ 26328025 (+) True G239752

Expression Profile