RNA id: TU272545


Basic Information

Item Value
RNA id TU272545
length 274
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G238509
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25149550 ~ 25149823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatgaaaccaaaatataacattttggtaaaaactcaacttgtcgtgtttggaggacaaagaatgccgagttgcatccaaagaacaccatacctactgtgaagcatggatgtggaaacatcatgctttggggctgtttttcagcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcttgagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272527 lncRNA downstream 19897 25129102 ~ 25129653 (-) True G238494
TU272416 lncRNA downstream 218102 24928799 ~ 24931448 (-) True G238414
TU272243 lncRNA downstream 380219 24767203 ~ 24769331 (-) False LOC110515154
TU272244 lncRNA downstream 381289 24767203 ~ 24768261 (-) False LOC110515154
TU272245 lncRNA downstream 384188 24764812 ~ 24765362 (-) True LOC110515141
TU272613 lncRNA upstream 21503 25171326 ~ 25172226 (-) False LOC110515384
TU272627 lncRNA upstream 28813 25178636 ~ 25178846 (-) True G238588
TU272632 lncRNA upstream 39236 25189059 ~ 25189309 (-) True G238593
TU272662 lncRNA upstream 87849 25237672 ~ 25237878 (-) True G238623
TU272663 lncRNA upstream 88365 25238188 ~ 25238510 (-) True G238624
XM_021594265.2 mRNA downstream 24108 25119183 ~ 25125442 (-) False notchl
XM_036973053.1 mRNA downstream 24108 25119183 ~ 25125442 (-) False notchl
XM_036973054.1 mRNA downstream 24108 25119183 ~ 25125442 (-) False notchl
XM_036973057.1 mRNA downstream 24108 25119183 ~ 25125442 (-) True notchl
XM_021594249.2 mRNA downstream 38434 25107822 ~ 25111116 (-) True LOC110515302
XM_021594305.2 mRNA upstream 21464 25171287 ~ 25236535 (-) False LOC110515384
XM_021594312.2 mRNA upstream 21464 25171287 ~ 25236535 (-) False LOC110515384
XM_036973147.1 mRNA upstream 21464 25171287 ~ 25236535 (-) False LOC110515384
XM_021594320.2 mRNA upstream 21464 25171287 ~ 25236536 (-) False LOC110515384
XM_036973180.1 mRNA upstream 316028 25465851 ~ 25510719 (-) False LOC110515443
TU272446 other downstream 183342 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 197368 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 202545 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 379227 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 379579 24769562 ~ 24769971 (-) False LOC110515154
TU272614 other upstream 49265 25199088 ~ 25236367 (-) True LOC110515384
TU273578 other upstream 673533 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1419278 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1524769 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1921232 27071055 ~ 27075883 (-) False LOC110516631

Expression Profile