RNA id: TU272661


Basic Information

Item Value
RNA id TU272661
length 208
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G238622
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25237720 ~ 25237927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctttatttaaccaggtgggctagttgagaacaagttctcatttgcaactgcgacctggccaagataaagcaaagcagtttgacacatacaacaacacagagttacacatggaataaacaaacatacaatcaataatacagtaggaaaatctatatacagtgagtgcaaatgaggtaggataagagaggtaaggcaataaataggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272659 lncRNA upstream 427 25237085 ~ 25237293 (+) True G238620
TU272571 lncRNA upstream 46318 25191140 ~ 25191402 (+) True G238534
TU272570 lncRNA upstream 46807 25190668 ~ 25190913 (+) True G238533
TU272568 lncRNA upstream 47947 25189570 ~ 25189773 (+) True G238531
TU272565 lncRNA upstream 54929 25182360 ~ 25182791 (+) True G238528
TU272849 lncRNA downstream 120407 25358334 ~ 25358552 (+) True G238774
TU272865 lncRNA downstream 132312 25370239 ~ 25370458 (+) True G238790
TU272992 lncRNA downstream 224878 25462805 ~ 25463214 (+) True G238916
TU272999 lncRNA downstream 226675 25464602 ~ 25464806 (+) True G238923
TU273019 lncRNA downstream 256489 25494416 ~ 25495060 (+) True G238937
XM_021594286.2 mRNA upstream 72355 25162240 ~ 25165365 (+) True vmo1b
XR_005042063.1 mRNA upstream 76570 25156376 ~ 25161150 (+) False LOC110515374
XM_036973158.1 mRNA downstream 24946 25262873 ~ 25270428 (+) True LOC110515419
XM_036973175.1 mRNA downstream 37476 25275403 ~ 25335823 (+) False LOC110515430
XM_036973178.1 mRNA downstream 37485 25275412 ~ 25335823 (+) False LOC110515430
XM_021594340.2 mRNA downstream 37499 25275426 ~ 25335823 (+) False LOC110515430
XM_036973177.1 mRNA downstream 37865 25275792 ~ 25335823 (+) True LOC110515430
TU272577 other upstream 38486 25195287 ~ 25199234 (+) True G238540
TU272008 other upstream 461775 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 471357 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 487337 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1182053 24055319 ~ 24055667 (+) True G236753
TU273162 other downstream 302842 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 975715 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1089481 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1089481 26327408 ~ 26328025 (+) True G239752
TU274539 other downstream 1813259 27051186 ~ 27051954 (+) True G240244

Expression Profile