RNA id: TU272772


Basic Information

Item Value
RNA id TU272772
length 1711
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G238712
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25333951 ~ 25335809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTCTGAAGGTTTTGGGAATTAACAGATAAGAGCAAAACCGGTATTCAGTTCAACCATCTGTAAAAATGGTTAACAACAGTTATAAATACAACTGTCACGACACTGAAGTTCATGAATTACTTTTTGTCCCAGTGTGGGCCCAGTTAAAACACTGGTGGTGAGATCCAGAGGTAGTGGTGGGTGGCTAAAGTTGACTAGGAGCAACACTGTTTCAGCACTGTGGAGAGAATGAACAGGGGACAAATACAAAACTAGAAGCAACTGGTGGGGAAAAAGCAGGTTAAGATGGATGTGAGGAAGAGGGTCTCTTTCCTCACCATCCATCCCCTTTGTTGACTGATTTGTAGCAAATGAGGCACAGTCGTACATGAAAACGTATTCATGAATAGGGTGCTAGTTTGTTACCAGGACTGGTTGAGAAGCTATTATTACTTTGTACATCCCACTCAACCCTCTCACATGGAATGGTGAAATGACACCAAAACGTAGGCCTAACGCGTTACTCTCTCCATGGTTCCTTCCCAAAGCAGTTGCTAGTTGTGCTTGAGACTCGACTGCCACCCTTTGGACCACACACTGAGGTTTAAAGTCTCTATCCGTCCCTCGGTCTCGACAAAGGAACAGTGGGAAAGTGTCAAGGACACTTCCATTTCACATCTGCACAGACAAATAAAATAGTTATTTTTCATGGACGAGCCATTTCCTTTACAAAATAAATCTTATTTCTCAAGAATACAATAATAAAATGAAGCACGTTGGAAAAAAAGTAACAGAACTCcatatatacacatactattTTGGCAGACAAAAACATGAACAAGTTCATTATTGTAAACAGCGCTCTCCTCCCTTTTCGTCTCGCCattgttcctcttcctgtttcctATTACATTCACAGCTCTAGTTTCTGGTTGGTCAGAAACCCGTAAATTGTGCTTAAGAAATCCTTGAGCCGTTCAGAGCGGCTCTCCTAGGGTCAGGCCCTGGGGTCTGCCTGTAAATAAGTGCACTGTCTCTACAGTAGGTCACTGCTTTAAGACTGTCCCGTGGCTGCAAGTTCACGTGGCCCTCCTAGTTGACCCGCAACATCTTGCTGTTGGACGTTGAGGTGGGCAGGAAGGGTTAAGGGCTTTTTGTGTGGTACCGGGTTAAGCAAAGGGAGGTTTTAGTGGGACTGGGGTGGGAATGGAATGGTTGTATACAGCGCTGGAATAAGAATAGTTGTGTGGCAACGGCACTAGAACAGTTACACTGTAGTCAGGTTTGTGTGGGACTGCGGTAAGGAGATTTATGTATGCCACTAGGGTAGGGAAAGGTGCTTGGGGGTATGAGTGCCACTAGGGTAGGGAAAGGTGCTTGAGGGTATGAGTTCCACTAGGGTAGGGAAAGGTGCTTGGGGGTATGAGTGCCACTAGGGTAGGGAAAAGTGCTTGGGGTATGAGTGCCACTAGGGTAGGGCAAGGGGCTTGAAGGTATGAAGGGTTTAGGGCGTAAGCCTTCAGTTGTCCTCCTCAGAGAGCTCGTCCTCCCCCGTGGCTTTCTCGGGGATGGCGTCCAGGCTGCGTGGTCGGGTCCTGGACTCGGAGCCTGCCGTGCTCCCTGATGGCCCGTCCTTACTGAGGTTACAGGTGAGGGCGGCGTAGTGGATCTGCTTCAGGTTCTCCTGGACTTCACTCTTTGCGTGCTTCAGCAGGTCCGCCTGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272787 lncRNA downstream 65830 25267770 ~ 25268121 (-) True G238713
TU272663 lncRNA downstream 95441 25238188 ~ 25238510 (-) True G238624
TU272662 lncRNA downstream 96073 25237672 ~ 25237878 (-) True G238623
TU272632 lncRNA downstream 144642 25189059 ~ 25189309 (-) True G238593
TU272627 lncRNA downstream 155105 25178636 ~ 25178846 (-) True G238588
TU272866 lncRNA upstream 34813 25370622 ~ 25370914 (-) True G238791
TU272868 lncRNA upstream 36670 25372479 ~ 25372740 (-) True G238793
TU272872 lncRNA upstream 39452 25375261 ~ 25375467 (-) True G238797
TU272873 lncRNA upstream 41666 25377475 ~ 25377701 (-) True G238798
TU272877 lncRNA upstream 45712 25381521 ~ 25381751 (-) True G238802
XM_021594320.2 mRNA downstream 97415 25171287 ~ 25236536 (-) False LOC110515384
XM_021594305.2 mRNA downstream 97416 25171287 ~ 25236535 (-) False LOC110515384
XM_021594312.2 mRNA downstream 97416 25171287 ~ 25236535 (-) False LOC110515384
XM_036973147.1 mRNA downstream 97416 25171287 ~ 25236535 (-) False LOC110515384
XM_036973057.1 mRNA downstream 208509 25119183 ~ 25125442 (-) True notchl
XM_036973180.1 mRNA upstream 130042 25465851 ~ 25510719 (-) False LOC110515443
XM_036973239.1 mRNA upstream 130042 25465851 ~ 25510720 (-) False LOC110515443
XM_036973179.1 mRNA upstream 130042 25465851 ~ 25521829 (-) False LOC110515443
XM_036973181.1 mRNA upstream 130042 25465851 ~ 25521829 (-) False LOC110515443
XM_036973182.1 mRNA upstream 130042 25465851 ~ 25521829 (-) False LOC110515443
TU272614 other downstream 97584 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 367743 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 381769 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 386946 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 563628 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 487547 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1233292 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1338783 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1735246 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1742230 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile