RNA id: TCONS_00029271


Basic Information

Item Value
RNA id TCONS_00029271
length 559
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_014832
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27283072 ~ 27339872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACGAATCTACTGTTTTGACGAAGGACCCCAACATGTGGAACTGCCTTGAGTAAAAACCTCTCAGTTTGTAGAGAAGTTTGTATTTGAAATGTCGTGTTTTAGAGGAGATGTCGACTTTTGTCCTGAATGTGGAAACATTCTTCCACTACCCAGCAGGCTGAATACTATCACCTGCCCACGATGCTCCTTCAAAATCTCTGTTCAAGACTTCACAAGTCAAGTGATCAAGTCATCGGTGATGTTTAATCCTTTGGATCAGAGCAATGTCGCTGTTGAAAGTGCAGAGGATGCTGAATTGAAGGGGCCAGTGATTGACAGGAAATGTTCTCGCTGTAATAAAGAGGGAATGGTTTATCATACAAGACAGATGAGATCTGCAGATGAAGGGCAAACTGTTTTCTTCACATGTATTCACTGCAGGTTCCAAGAAAAGGAAGACTCATGAGAAATGTGTTGCTGCTGCTGTCTTATATTGATTGCTAGAATTTAAttgtataaaataatgtaaaggtTTTGTTTGTATTCATACTATTCAGTGTTAATAAAAATTATCAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko05203 Viral carcinogenesis
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

Ensembl:

ensembl_id ENSDART00000147661

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029266 lncRNA downstream 181 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029263 lncRNA downstream 19868 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029258 lncRNA downstream 327767 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029254 lncRNA downstream 416980 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029248 lncRNA downstream 510821 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00029277 lncRNA upstream 113695 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00030238 lncRNA upstream 113695 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00030239 lncRNA upstream 124073 27463930 ~ 27469200 (-) False XLOC_014836
TCONS_00030240 lncRNA upstream 124073 27463930 ~ 27469230 (-) False XLOC_014836
TCONS_00030241 lncRNA upstream 124073 27463930 ~ 27469235 (-) False XLOC_014836
TCONS_00029265 mRNA downstream 136 27316467 ~ 27334394 (-) False XLOC_014832
TCONS_00029262 mRNA downstream 19468 27283072 ~ 27315062 (-) False XLOC_014832
TCONS_00029260 mRNA downstream 73428 27041268 ~ 27261102 (-) True XLOC_014830
TCONS_00029259 mRNA downstream 138440 27040533 ~ 27196090 (-) False XLOC_014830
TCONS_00029257 mRNA downstream 327766 26967357 ~ 27006764 (-) False XLOC_014829
TCONS_00029273 mRNA upstream 27075 27366932 ~ 27391179 (-) False XLOC_014833
TCONS_00029274 mRNA upstream 28388 27368245 ~ 27395531 (-) True XLOC_014833
TCONS_00029275 mRNA upstream 59311 27399168 ~ 27445747 (-) False XLOC_014834
TCONS_00029276 mRNA upstream 59311 27399168 ~ 27448606 (-) True XLOC_014834
TCONS_00029278 mRNA upstream 117110 27456967 ~ 27462720 (-) True XLOC_014835
TCONS_00029261 other downstream 161700 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029249 other downstream 497406 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1815990 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 2185546 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 2273653 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029282 other upstream 124559 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 125247 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 125479 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029289 other upstream 128592 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029297 other upstream 231849 27571706 ~ 27575094 (-) True XLOC_014839

Expression Profile

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