RNA id: TCONS_00029277


Basic Information

Item Value
RNA id TCONS_00029277
length 1202
lncRNA type read_through
GC content 0.39
exon number 2
gene id XLOC_014835
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27453552 ~ 27463611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGCAGATGGGCTGTAATCTCTGGAAGATGTACCTGCCTGCATTTAGAACCAACAAAACTAAAGATTTCTCGTCGTAGGTATGTTTGATTTATCTTGTCAAAAGCGATTCGCCGTTTGACATCAATACAGTTTAGCATTTCAAGTTGTGGAGACGATCCTGGATGTGAAGCTTGCTCAGACATGCTAACAGACGCCGTTTCGCCTGAGGAAAATGCTGCTTGAGACCAAGCAATGCTACCACGGTGCATTCAGAGTAAAGGGAGGACAGACTGATGTGAATGCTGGGATACAGATGACTGCAGTGACGGTCCTGATGGGAATCAACTGTATCTGACATCAGTGGAAAGATGATGTGCATTTGGTCTTGGCCACTGGCCAGGATTCAGCCATGCACCCTTTATACCAAACATAATCAGTTTACACCGTAAAGCCAGACGGCATGCTTCGTTCCCAATAATTAGCTGGATTTTATGCCAATTTctgctaaataaatgcagccatggAGCCCAGGATGAGATGATGTACCTTACATCGCATGATGACTGATATTCTCCATCGCTCATTTCATGTAAGGCATAAGAACGAAGGGATGATAAACCAATTATACACGTTATAGATCAATCCTGTTGTTTAAATGACAatatgctgttaatttactcatgcTCCGGTAGTCCAAGAGGACTTTTTCTTCAACagattttgtttcatgttttagaGTCACACATATTTATTTCGAGTGCTTTTATTTACTCTCAAAATGTCAGACTTgcattatatgaatcaccaaggaccacagtttAAGCTAATATTCCATATTGTCAACAAAATTAAAAGTCAGGATGACCTGAGGGTGAGTGAATTgacagcaaatgttcatttttaggtaatCTATCCCTTAAGCGACCCTCTGCTGTTTAATTTGGATTAATGATCCAGCTAATGCTCTGAACTCGAGCATAACAGATGTTTCTCAGTCTACTAAGAAAAAACACATCAATTTCTTTGTATGTTCGTGCGGACTAGTCTGATTGTCTGAAGGGAGACTCACTAACTCACTCAAAACTAATGGAGATGTTTTGatcataaaaatattcaaaaggtTGAGTTCctgaaatttgtatttattcatttattgaaatTCACTATAGCACACAACACATATAACGCTTCAATTTCCTCAAGTGATATGAAGAAATACTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029266 lncRNA downstream 119203 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029263 lncRNA downstream 138890 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029258 lncRNA downstream 446789 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029254 lncRNA downstream 536002 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029248 lncRNA downstream 629843 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00030239 lncRNA upstream 1148 27463930 ~ 27469200 (-) False XLOC_014836
TCONS_00030240 lncRNA upstream 1148 27463930 ~ 27469230 (-) False XLOC_014836
TCONS_00030241 lncRNA upstream 1148 27463930 ~ 27469235 (-) False XLOC_014836
TCONS_00030243 lncRNA upstream 1148 27463930 ~ 27469245 (-) False XLOC_014836
TCONS_00030242 lncRNA upstream 1148 27463930 ~ 27469245 (-) False XLOC_014836
TCONS_00029276 mRNA downstream 4946 27399168 ~ 27448606 (-) True XLOC_014834
TCONS_00029275 mRNA downstream 7805 27399168 ~ 27445747 (-) False XLOC_014834
TCONS_00029274 mRNA downstream 58021 27368245 ~ 27395531 (-) True XLOC_014833
TCONS_00029273 mRNA downstream 62373 27366932 ~ 27391179 (-) False XLOC_014833
TCONS_00029272 mRNA downstream 113680 27334530 ~ 27339872 (-) True XLOC_014832
TCONS_00029290 mRNA upstream 59643 27522425 ~ 27542277 (-) False XLOC_014837
TCONS_00029291 mRNA upstream 59643 27522425 ~ 27542433 (-) True XLOC_014837
TCONS_00029292 mRNA upstream 83619 27546401 ~ 27564980 (-) False XLOC_014838
TCONS_00029293 mRNA upstream 83619 27546401 ~ 27570363 (-) False XLOC_014838
TCONS_00029294 mRNA upstream 85677 27548459 ~ 27550768 (-) False XLOC_014838
TCONS_00029268 other downstream 116923 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029261 other downstream 280722 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029249 other downstream 616428 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1935012 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 2304568 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029282 other upstream 1634 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 2322 27465104 ~ 27465170 (-) False XLOC_014836
TCONS_00029288 other upstream 2554 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029289 other upstream 5667 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029297 other upstream 108924 27571706 ~ 27575094 (-) True XLOC_014839

Expression Profile

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