RNA id: TU274763


Basic Information

Item Value
RNA id TU274763
length 509
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G240431
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26605207 ~ 26605715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGCTTGCTCCCACAGAGGCCGAGGTCGTATTCGAAGATGAGGGAAACTTTTGTAGATTTATTGGCATGGCATGTTCCGAGTGTCAGTTGAGACAGTGAACTCCCGGTGcccaaaatgtttttctttaCCTGCACGAACATCTTGTTGATGTTACAAAGTGTTATCACTTCGCGGGCTTGACTTTTTGGACCAGAGGGCTTCTGTGTTGGGTACACCGGGACCAGTATTTTCCTAACTTTATCCGGTAATTGTTCGTGTCCAGTTCCACGGACTGGAGAGAAATGTTCCTTGTCTACCAGCGGCACCCTTGAGTGCTGGAACACAGGTAGTTCGAGGTAAGATGGTGAGTCTTCGGCGAATACCTTCACAGAAGACTGGCGTGCATTTGAGCCTCCCTCTGCTCTTAGAGAATGCAAAAGAAACAACAACGCCAAGttgaaaatataaaacatatcTATATTCCTGTACCAAAATGGTACAATATCTCGAGCAAAATCAGGCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274743 lncRNA downstream 31424 26573004 ~ 26573783 (-) True G240412
TU274714 lncRNA downstream 37236 26567694 ~ 26567971 (-) True G240383
TU274734 lncRNA downstream 64067 26539544 ~ 26541140 (-) True G240403
TU274733 lncRNA downstream 65962 26538926 ~ 26539245 (-) True G240402
TU274707 lncRNA downstream 68599 26535842 ~ 26536608 (-) True mgat1a
TU274764 lncRNA upstream 64 26605779 ~ 26606214 (-) True G240432
TU274780 lncRNA upstream 22559 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA upstream 22602 26628317 ~ 26630084 (-) True G240445
TU274789 lncRNA upstream 32447 26638162 ~ 26638375 (-) True G240450
TU274772 lncRNA upstream 53356 26659071 ~ 26659348 (-) True G240438
XM_021594711.2 mRNA downstream 37577 26548090 ~ 26567630 (-) True dhx16
XM_021594715.2 mRNA downstream 37835 26548090 ~ 26567372 (-) False dhx16
XM_021594706.2 mRNA downstream 37836 26548090 ~ 26567371 (-) False dhx16
XM_021594722.2 mRNA downstream 57366 26541714 ~ 26547841 (-) True LOC110516135
XM_021594697.2 mRNA downstream 68566 26533644 ~ 26536641 (-) False mgat1a
XM_021594751.2 mRNA upstream 2437 26608152 ~ 26621795 (-) False LOC110516190
XM_021594761.2 mRNA upstream 2437 26608152 ~ 26621798 (-) False LOC110516190
XM_021594756.2 mRNA upstream 2984 26608699 ~ 26621529 (-) True LOC110516190
XM_021584202.2 mRNA upstream 31012 26636727 ~ 26637149 (-) True LOC110505173
XM_021594792.2 mRNA upstream 41310 26647025 ~ 26649990 (-) True LOC110516273
TU274740 other downstream 35685 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 780450 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1368840 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1653025 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 68877 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 465340 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 472324 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 478625 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 506467 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile