RNA id: TU274783


Basic Information

Item Value
RNA id TU274783
length 1200
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G240445
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26628274 ~ 26630084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgtattaatttattGCAAACTTTGGAGACAATTCATTTTTCCAATTTAAGAATGTACTGTAAAACAGAGGGCATTATTATCATCACATTTTTGTCGCTtgccttaaaaaaaaaatgtgaatggCCCCTATCTCCATTATTCCCCCTTCAGGTCACTGATTAGGAATGGCTCCATCTCCATCAGGATATCTAAGAATATATCTTTGCCTTTGGGCCCACATGCTTTCAGAGGGCCATCGTAGAGCTCCCTCATCCTGTTCTGGGTGGTTCTGTTAGCCTTCACGTCACTGTAGGCGTTTTGGGTGATGATTCCCCTCTCCAGGAGTCTATCCAGTAGGGGTTCCACCTGGCTCACTCTGTCGATCAGGGCCGTCCGGTGATGGTCCACAAAGTTTACCTTGGTTCATCTTCGTTGGTCCAGTTGCACTTTCCATTCTATCACCAGATGTTACGCAAGATCCCGGAGCTGTAAAATAGACTTCATGAGACGCCACCAATCGAATAAAAATATTGAATAGTAGGGCCTAAAGATAAATCAGCAAGCAATCTAAATGTGTTTATTGCAGAATGTATTAGGCCTACTTTTAGTTGAAAATTAATATATACTACTGTACGCTATCATTCTGGTCAGAAGAGCAAAATAGAATGCTCGCATAAGTGAAAGTAAAACTGTCAACTTCCTTATAGTTTTCCTTCCCTACGTTATGGACATTTCAATGTAATTTATTTAGGCCCTAGATCAAATCAAGTTTTGTTCTAGCCTACTTTTGGGTTAACTGAAGTGTTTTTAAACCTTTCAAAGATATGAAATTAAATATTTGTAAATGTCCAATGGACGTGCCTCCTACTTTATTCGACTTACATTTCTTGAATTCCATCAGTTCCTTTGCGACATCTTGGCAGTTAATTGCAGCCAAGACCTCTATAGCCACATTCACAGCCCCGTCTTCAGTGAAGGTACGGGTCAGAATGTCTACCAAGTCCACTGGGTCAGCTTTCTCAACAATGCCCCTGCGAACTTTTGGCTCCTGCTTGCGGTCACAGAGCTTACGTCTGAACTTCTTCAATTCAGCCTCTCCCAAGTCATCCAGGACTCCAATTAATATATCGCCAACGGTTTTCGACATTTTTTATGCCAAACTGTAATTTAAACAAGGTTTTCTAACATTAGGCTACGTGCCTTCTATTCTGTTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274764 lncRNA downstream 22103 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 22602 26605207 ~ 26605715 (-) True G240431
TU274743 lncRNA downstream 54534 26573004 ~ 26573783 (-) True G240412
TU274714 lncRNA downstream 60346 26567694 ~ 26567971 (-) True G240383
TU274734 lncRNA downstream 87177 26539544 ~ 26541140 (-) True G240403
TU274789 lncRNA upstream 8078 26638162 ~ 26638375 (-) True G240450
TU274772 lncRNA upstream 28987 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 32911 26662995 ~ 26664067 (-) True G240456
TU274798 lncRNA upstream 36975 26667059 ~ 26667329 (-) True G240458
TU274803 lncRNA upstream 40544 26670628 ~ 26670901 (-) True G240463
XM_021594761.2 mRNA downstream 6519 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 6522 26608152 ~ 26621795 (-) False LOC110516190
XM_021594756.2 mRNA downstream 6788 26608699 ~ 26621529 (-) True LOC110516190
XM_021594711.2 mRNA downstream 60687 26548090 ~ 26567630 (-) True dhx16
XM_021594715.2 mRNA downstream 60945 26548090 ~ 26567372 (-) False dhx16
XM_021584202.2 mRNA upstream 6643 26636727 ~ 26637149 (-) True LOC110505173
XM_021594792.2 mRNA upstream 16941 26647025 ~ 26649990 (-) True LOC110516273
XM_021594796.2 mRNA upstream 61654 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 61654 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 98990 26729074 ~ 26736469 (-) True LOC110505184
TU274740 other downstream 58795 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 803560 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1391950 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1676135 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 44508 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 440971 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 447955 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 454256 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 482098 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile