RNA id: TU274789



Basic Information


Item Value
RNA id TU274789
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G240450
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26638162 ~ 26638375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCGTAGTCAAACAATATTTTATCTGCAAATTCTGAGATTATCCCAAGGACTCCTTAGGTGCAGAATGCCTGGGGTCTACTAACTGGGATATGTTTATCATGCAGAATGGAGTTTTGACACAATTATATGTTGTTCATTCCGTCTGCAATGCTGAATGTTCACTCCACCACTTAGGCCCCTGAAGGTGAGTCTCCAGgtaacacatgcatgcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU274780 lncRNA downstream 8078 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA downstream 8078 26628317 ~ 26630084 (-) True G240445
TU274764 lncRNA downstream 31948 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 32447 26605207 ~ 26605715 (-) True G240431
TU274743 lncRNA downstream 64379 26573004 ~ 26573783 (-) True G240412
TU274772 lncRNA upstream 20696 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 24620 26662995 ~ 26664067 (-) True G240456
TU274798 lncRNA upstream 28684 26667059 ~ 26667329 (-) True G240458
TU274803 lncRNA upstream 32253 26670628 ~ 26670901 (-) True G240463
TU274815 lncRNA upstream 60906 26699281 ~ 26699605 (-) True G240472
XM_021584202.2 mRNA downstream 1013 26636727 ~ 26637149 (-) True LOC110505173
XM_021594761.2 mRNA downstream 16364 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 16367 26608152 ~ 26621795 (-) False LOC110516190
XM_021594756.2 mRNA downstream 16633 26608699 ~ 26621529 (-) True LOC110516190
XM_021594711.2 mRNA downstream 70532 26548090 ~ 26567630 (-) True dhx16
XM_021594792.2 mRNA upstream 8650 26647025 ~ 26649990 (-) True LOC110516273
XM_021594796.2 mRNA upstream 53363 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 53363 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 90699 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 174091 26812466 ~ 26817929 (-) True LOC110516341
TU274740 other downstream 68640 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 813405 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1401795 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1685980 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 36217 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 432680 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 439664 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 445965 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 473807 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile